Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   VQZ30_RS12640 Genome accession   NZ_CP142375
Coordinates   2588801..2590441 (-) Length   546 a.a.
NCBI ID   WP_045358975.1    Uniprot ID   A0A0A1VTX7
Organism   Microcystis aeruginosa 1339     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2583801..2595441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VQZ30_RS12615 (VQZ30_12615) - 2584403..2585443 (+) 1041 WP_341853535.1 acyltransferase -
  VQZ30_RS12620 (VQZ30_12620) - 2585631..2586827 (-) 1197 WP_199319124.1 DUF4377 domain-containing protein -
  VQZ30_RS12625 (VQZ30_12625) - 2587072..2587416 (+) 345 WP_190381398.1 YbaB/EbfC family nucleoid-associated protein -
  VQZ30_RS12630 (VQZ30_12630) - 2587476..2588198 (+) 723 WP_199319125.1 pyridoxine 5'-phosphate synthase -
  VQZ30_RS12635 (VQZ30_12635) - 2588266..2588577 (+) 312 WP_045358973.1 MgPME-cyclase complex family protein -
  VQZ30_RS12640 (VQZ30_12640) comA 2588801..2590441 (-) 1641 WP_045358975.1 DUF655 domain-containing protein Machinery gene
  VQZ30_RS12645 (VQZ30_12645) - 2590670..2593096 (+) 2427 WP_190380792.1 dynamin-like GTPase family protein -
  VQZ30_RS12650 (VQZ30_12650) - 2593197..2595011 (-) 1815 WP_045358979.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 546 a.a.        Molecular weight: 61472.07 Da        Isoelectric Point: 9.4881

>NTDB_id=925537 VQZ30_RS12640 WP_045358975.1 2588801..2590441(-) (comA) [Microcystis aeruginosa 1339]
MWAKMAIDKWRLKKIRNMGQLGFLLGIVFLLGGCHSLNVIPNRPQPLPQDQYIQVYFNHNQARGSNYTDPYRQINRPGDN
LEQVIIDNINSAKSSIDLAVQELRLPAIAQALVERQQQGIKVRVILENIYNQPINSLAKNQEQSSDREQERYQNLFDLVD
INRDGKLSPEEIAQRDAITILKKAGIPLIDDRADRSKGSGLMHHKFMVIDDHTTLISSANYTLSDIHGDFSNPKTVGNAN
HLLVITNPPLARVFQREFNLMWGREDRPKFGLDKPQRNPQTITIGNSSLTVKFSPDSTAYPWTITSNGLIGETLNKAKKS
VDLALFVLTEQPLANILAQRHQKGIEIKALIDPSFAFRYYSEGLDLLGVALSNKCRYEPDNQPWQNPINTLGVPALAPGD
KLHHKFGLIDDKIVITGSHNWSKAANHQNDEALVIINNPTVAAHFDREFQYLYRTAKLGLPETIKNRIEQDRKNCPQSVT
IQSDRLINLNTATKEELDTLPGISGKLAEKIIAARQQKPFTSLEDLDRVSGIGQGKINKLKGKVSW

Nucleotide


Download         Length: 1641 bp        

>NTDB_id=925537 VQZ30_RS12640 WP_045358975.1 2588801..2590441(-) (comA) [Microcystis aeruginosa 1339]
ATGTGGGCAAAAATGGCAATAGATAAATGGAGATTAAAAAAAATTCGGAATATGGGACAGTTAGGATTTTTGTTAGGAAT
AGTTTTTCTTTTGGGTGGTTGTCATTCTCTCAATGTTATCCCAAATCGTCCGCAACCCTTGCCCCAAGATCAATATATTC
AAGTCTATTTTAATCATAATCAGGCCCGGGGTTCAAATTATACCGATCCCTATCGCCAAATTAATCGCCCGGGAGATAAT
TTAGAACAGGTTATTATTGATAATATCAACTCGGCTAAAAGTTCGATCGATCTAGCAGTGCAAGAGTTACGTTTACCCGC
CATCGCTCAAGCTTTAGTTGAGCGTCAGCAACAGGGAATTAAAGTTAGGGTTATCCTCGAAAATATTTACAATCAACCTA
TTAATAGTTTAGCCAAAAACCAAGAACAATCAAGCGATCGAGAACAGGAACGTTATCAAAACCTTTTTGATTTAGTTGAT
ATAAATCGAGATGGTAAATTAAGTCCAGAGGAAATCGCCCAAAGAGATGCAATTACTATCCTCAAAAAAGCTGGTATTCC
CCTAATTGATGATAGGGCTGATCGCTCAAAAGGTAGTGGTTTAATGCACCATAAATTCATGGTTATTGATGATCACACTA
CTTTAATTAGTTCAGCTAACTATACCTTAAGTGATATTCATGGAGACTTTTCTAATCCCAAAACTGTCGGTAATGCCAAT
CACTTATTAGTAATTACTAATCCCCCACTAGCTAGAGTTTTTCAAAGGGAATTTAATCTGATGTGGGGAAGGGAAGATCG
GCCTAAATTTGGGTTAGATAAACCCCAAAGAAACCCGCAAACAATTACTATCGGTAATAGTAGTCTGACGGTAAAATTTT
CCCCCGATTCTACCGCTTATCCCTGGACAATTACTAGCAATGGTCTGATCGGTGAAACTTTAAATAAAGCTAAAAAATCC
GTGGATTTAGCCCTGTTTGTCCTGACGGAACAGCCTTTAGCTAATATTCTCGCCCAACGACATCAAAAAGGTATAGAAAT
TAAAGCTTTAATTGATCCTAGTTTTGCCTTCCGATACTATAGCGAAGGATTAGATTTATTAGGAGTTGCTCTCAGTAATA
AATGTCGTTATGAACCAGATAATCAGCCTTGGCAAAACCCAATTAATACCCTAGGAGTTCCCGCTCTAGCCCCGGGAGAT
AAATTACACCATAAATTCGGTTTAATCGATGATAAAATTGTGATTACTGGTTCTCATAATTGGTCAAAAGCTGCTAACCA
TCAAAACGATGAAGCTTTAGTTATTATCAATAATCCCACCGTTGCTGCTCATTTCGATCGAGAATTTCAATATCTTTACC
GTACCGCTAAATTAGGACTGCCGGAAACTATTAAAAATCGGATCGAACAGGATAGAAAAAACTGCCCCCAATCTGTAACA
ATTCAAAGCGATCGCTTAATTAATTTAAACACTGCCACAAAAGAAGAATTAGATACTTTACCCGGTATCAGTGGCAAATT
AGCCGAAAAAATTATCGCAGCCCGGCAACAAAAACCCTTTACTTCCCTAGAAGATTTGGATCGAGTATCGGGAATCGGTC
AGGGAAAAATTAACAAGCTCAAAGGCAAAGTCAGCTGGTGA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(312-452)

PLD-like domain (PLDc_2)

(85-262)

Helix-hairpin-helix motif (HHH_3)

(485-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A1VTX7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

52.345

97.619

0.511