Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   AB5J53_RS27200 Genome accession   NZ_CP163443
Coordinates   5938873..5940282 (-) Length   469 a.a.
NCBI ID   WP_369248275.1    Uniprot ID   -
Organism   Streptomyces sp. R41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5933873..5945282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J53_RS27175 (AB5J53_27180) - 5933954..5934541 (-) 588 WP_369248270.1 hypothetical protein -
  AB5J53_RS27180 (AB5J53_27185) - 5934589..5935140 (-) 552 WP_369248271.1 SigE family RNA polymerase sigma factor -
  AB5J53_RS27185 (AB5J53_27190) - 5935380..5936288 (-) 909 WP_369248272.1 A/G-specific adenine glycosylase -
  AB5J53_RS27190 (AB5J53_27195) - 5936624..5937430 (+) 807 WP_369248273.1 hypothetical protein -
  AB5J53_RS27195 (AB5J53_27200) disA 5937680..5938804 (-) 1125 WP_369248274.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  AB5J53_RS27200 (AB5J53_27205) radA/sms 5938873..5940282 (-) 1410 WP_369248275.1 DNA repair protein RadA Machinery gene
  AB5J53_RS27205 (AB5J53_27210) - 5940518..5942083 (-) 1566 WP_369248276.1 MFS transporter -
  AB5J53_RS27210 (AB5J53_27215) - 5942391..5943755 (-) 1365 WP_369248277.1 alpha/beta hydrolase -
  AB5J53_RS27215 (AB5J53_27220) - 5944198..5945025 (-) 828 WP_369252491.1 PaaX family transcriptional regulator C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49880.14 Da        Isoelectric Point: 8.2598

>NTDB_id=925537 AB5J53_RS27200 WP_369248275.1 5938873..5940282(-) (radA/sms) [Streptomyces sp. R41]
MAARTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGTPAVRTTTPGRVTTSAVPIGQVDGRQATARTTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLTDPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKIPPGMKVLEVADMGDALRVLPRSRRREAPREVEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=925537 AB5J53_RS27200 WP_369248275.1 5938873..5940282(-) (radA/sms) [Streptomyces sp. R41]
ATGGCTGCCCGTACGAAAACCGCGAAGGACCGACCGTCCTACCGCTGCACAGAGTGCGGCTGGCAGACGGCAAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCATGGGGGACGGTCGAGGAGTACGGCACGCCCGCGGTACGGACGACGACGCCCGGCC
GCGTCACGACGTCCGCGGTGCCCATCGGCCAGGTCGACGGCCGCCAGGCCACGGCGCGCACGACCGGCGTGCCCGAGCTG
GACCGCGTCCTGGGCGGCGGCCTGGTCCCCGGTGCGGTGGTCCTCGTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACGCT
CCTCCTCGACGTGGCGGCGAAGTCGGCGAGCGACGAGCACCGCACGTTGTACGTGACGGGTGAGGAGTCGGCGAGCCAGG
TCCGGCTCCGAGCCGACCGCATCAAGGCGATCGACGACCACCTCTATCTCGCCGCGGAAACCGATCTGGCCGCCGTCCTC
GGCCACTTGGACGCGGTGAAGCCGTCCCTGCTGATCCTGGACTCGGTCCAGACGGTGGCCTCCCCGGAGATCGACGGCGC
ACCCGGCGGCATGGCGCAGGTCCGCGAGGTGGCGGGCGCCCTGATCCGCGCGTCCAAGGAGCGCGGCATGTCCACGCTCC
TTGTGGGCCACGTCACCAAGGACGGCGCGATCGCGGGCCCGCGGCTCCTCGAACACCTCGTGGACGTCGTCCTGCACTTC
GAGGGCGACCGGCACGCACGCCTCAGGCTCGTACGAGGGGTCAAGAACCGTTACGGGACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTGACCGACCCGAGCGGTCTGTTCCTGACCCGCCGTGCCGAGCCGGTCCCCG
GCACCTGCCTGACCGTCACGCTGGAGGGCCGCCGCCCGCTGGTCGCCGAAGTCCAGGCACTCACCGTCGACTCGCAGATC
CCCTCCCCCCGCCGCACCACCTCCGGTCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTTCTGGAGCAGCGGGGCAG
GATCACAGCCCTCGGGAAACGGGACATCTACTCGGCGACGGTCGGCGGCGTGAAGCTCTCCGAGCCCGCCGCGGACCTCG
CGATCGCGCTCGCGCTCGCGTCCGCGGCGAGTGACACCCCGCTCCCCAAGAACCTCGTGGCGATCGGCGAAGTGGGGCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCCGGCTCGCCGAAGCGCACCGCCTGGGCTTCACGCACGCCCTCGT
ACCGACCGACCCGGGCAAGATCCCTCCCGGTATGAAGGTCCTGGAAGTCGCGGACATGGGCGACGCGCTGCGAGTCCTTC
CGCGCTCCCGTCGCAGAGAGGCCCCACGGGAGGTCGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.046

96.588

0.416
  radA Streptococcus mitis NCTC 12261

43.111

95.949

0.414
  radA Streptococcus mitis SK321

43.111

95.949

0.414
  radA Streptococcus pneumoniae TIGR4

42.667

95.949

0.409
  radA Streptococcus pneumoniae D39

42.667

95.949

0.409
  radA Streptococcus pneumoniae Rx1

42.667

95.949

0.409
  radA Streptococcus pneumoniae R6

42.667

95.949

0.409