Detailed information    

insolico Bioinformatically predicted

Overview


Name   disA   Type   Machinery gene
Locus tag   AB5J53_RS27195 Genome accession   NZ_CP163443
Coordinates   5937680..5938804 (-) Length   374 a.a.
NCBI ID   WP_369248274.1    Uniprot ID   -
Organism   Streptomyces sp. R41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 5932680..5943804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J53_RS27170 (AB5J53_27175) cseB 5933230..5933934 (-) 705 WP_369248269.1 two-component system response regulator CseB -
  AB5J53_RS27175 (AB5J53_27180) - 5933954..5934541 (-) 588 WP_369248270.1 hypothetical protein -
  AB5J53_RS27180 (AB5J53_27185) - 5934589..5935140 (-) 552 WP_369248271.1 SigE family RNA polymerase sigma factor -
  AB5J53_RS27185 (AB5J53_27190) - 5935380..5936288 (-) 909 WP_369248272.1 A/G-specific adenine glycosylase -
  AB5J53_RS27190 (AB5J53_27195) - 5936624..5937430 (+) 807 WP_369248273.1 hypothetical protein -
  AB5J53_RS27195 (AB5J53_27200) disA 5937680..5938804 (-) 1125 WP_369248274.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  AB5J53_RS27200 (AB5J53_27205) radA/sms 5938873..5940282 (-) 1410 WP_369248275.1 DNA repair protein RadA Machinery gene
  AB5J53_RS27205 (AB5J53_27210) - 5940518..5942083 (-) 1566 WP_369248276.1 MFS transporter -
  AB5J53_RS27210 (AB5J53_27215) - 5942391..5943755 (-) 1365 WP_369248277.1 alpha/beta hydrolase -

Sequence


Protein


Download         Length: 374 a.a.        Molecular weight: 40049.81 Da        Isoelectric Point: 4.9269

>NTDB_id=925536 AB5J53_RS27195 WP_369248274.1 5937680..5938804(-) (disA) [Streptomyces sp. R41]
MAANDRAAAPGKSGGSSGADGLMRASLSAVAPGTALRDGLERILRGNTGGLIVLGSDKTVEAMCTGGFVLDVEFTATRLR
ELCKLDGGIVLDKDITKILRAGVQLVPDPTIPTEETGTRHRTADRVSKQVGFPVVSVSQSMRLIALYVDGQRRVLEDSAA
ILSRANQALATLERYKLRLDEVAGTLSALEIEDLVTVRDVSAVAQRLEMVRRIATEIAEYVVELGTDGRLLALQLDELIA
GVEPERELVVRDYVPEPTAKRSRTVDEALSELDALSHAELLELPTVARALGYTGSPEALDSAVSPRGFRLLAKVPRLPGA
IIDRLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGLSRLAESSILERYV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=925536 AB5J53_RS27195 WP_369248274.1 5937680..5938804(-) (disA) [Streptomyces sp. R41]
GTGGCAGCCAACGACCGGGCAGCAGCTCCCGGAAAGTCCGGTGGGAGCTCCGGTGCCGATGGCCTGATGCGCGCCTCACT
GAGCGCCGTGGCACCCGGCACGGCGCTGCGCGACGGGCTTGAGCGGATTCTCCGCGGCAACACGGGCGGACTCATCGTGC
TCGGCTCCGACAAGACCGTCGAAGCGATGTGTACGGGCGGATTCGTCCTGGATGTCGAGTTCACCGCGACCCGCCTGCGC
GAACTGTGCAAGCTCGACGGCGGCATCGTGCTCGACAAGGACATCACCAAGATCCTGCGGGCAGGCGTGCAGCTGGTGCC
CGACCCGACGATCCCGACGGAGGAGACGGGCACGCGGCACCGCACCGCGGACCGGGTGAGCAAGCAGGTCGGCTTCCCGG
TGGTGTCCGTCTCCCAGTCGATGCGCCTGATCGCCCTGTACGTCGACGGTCAGCGCCGCGTCCTGGAGGACTCCGCCGCG
ATCCTCTCCCGCGCCAACCAGGCCCTCGCGACCCTGGAGCGCTACAAGCTCCGCCTCGACGAGGTCGCGGGCACGCTGTC
GGCGCTGGAGATCGAGGACCTGGTCACCGTCCGGGACGTCTCGGCGGTCGCCCAGCGCCTGGAGATGGTGCGGCGCATCG
CCACCGAGATCGCCGAGTACGTGGTCGAGCTGGGTACCGACGGGCGTCTTCTCGCGCTCCAGCTGGACGAGTTGATCGCG
GGCGTCGAGCCCGAGCGCGAGCTCGTCGTACGGGACTACGTGCCCGAGCCGACCGCCAAGCGCTCCCGCACGGTCGACGA
GGCGCTCTCCGAGCTGGACGCGCTCAGCCACGCGGAGCTCCTCGAACTCCCCACCGTGGCACGGGCGTTGGGCTACACAG
GCTCTCCCGAGGCCCTCGATTCGGCCGTCTCCCCGCGCGGCTTCCGCCTCCTCGCCAAGGTGCCCCGGCTGCCCGGCGCG
ATCATCGACCGGCTCGTGGAGCACTTCGGGGGGCTGCAGAAGCTGCTCGCCGCGAGCGTGGACGACCTGCAGACGGTCGA
TGGGGTGGGCGAGGCGCGGGCGCGCAGCGTCCGCGAGGGGCTCTCGCGGCTGGCGGAGTCGTCGATTCTGGAGCGGTACG
TCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  disA Bacillus subtilis subsp. subtilis str. 168

45.429

96.524

0.438