Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VUF91_RS00040 Genome accession   NZ_CP142373
Coordinates   9245..9763 (+) Length   172 a.a.
NCBI ID   WP_011254001.1    Uniprot ID   -
Organism   Lactobacillus acidophilus strain C4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4245..14763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VUF91_RS00025 gyrB 4253..6217 (+) 1965 WP_003549374.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  VUF91_RS00030 gyrA 6228..8702 (+) 2475 WP_003549372.1 DNA gyrase subunit A -
  VUF91_RS00035 rpsF 8903..9199 (+) 297 WP_003549370.1 30S ribosomal protein S6 -
  VUF91_RS00040 ssb 9245..9763 (+) 519 WP_011254001.1 single-stranded DNA-binding protein Machinery gene
  VUF91_RS00045 rpsR 9792..10028 (+) 237 WP_003549366.1 30S ribosomal protein S18 -
  VUF91_RS00050 - 10207..12228 (+) 2022 WP_003549345.1 DHH family phosphoesterase -
  VUF91_RS00055 rplI 12241..12696 (+) 456 WP_003549343.1 50S ribosomal protein L9 -
  VUF91_RS00060 dnaB 12722..14116 (+) 1395 WP_003549341.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18829.48 Da        Isoelectric Point: 4.7317

>NTDB_id=925490 VUF91_RS00040 WP_011254001.1 9245..9763(+) (ssb) [Lactobacillus acidophilus strain C4]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFISCVIWRKAAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFSLLESRKDREARGQSGGYTPNNGNINNQPANNFQNNGGSQNNPQINNNQSSSQDPFAGSG
DTIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=925490 VUF91_RS00040 WP_011254001.1 9245..9763(+) (ssb) [Lactobacillus acidophilus strain C4]
ATGATTAATAGAGTTGTACTTGTTGGCCGATTAACACGTGATCCTGAATTGCGTACTACTGGAAGTGGAATTTCGGTAGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGTCAGGGTGAGAGAGGCGCAGACTTTATCAGCTGTGTAATCT
GGAGAAAGGCTGCGGAAAACTTCTGTAACTTTACTTCAAAAGGTTCATTAGTTGGTATTGATGGCCGTATTCAAACCAGA
AGCTATGACAATAAAGATGGGCAACGAGTATATGTAACTGAAGTTGTTGTTGATAACTTCTCATTACTTGAATCACGTAA
GGATCGTGAAGCCCGCGGTCAAAGTGGTGGATATACACCAAATAATGGAAATATTAACAATCAACCTGCTAATAATTTCC
AAAATAATGGTGGATCACAAAATAATCCACAGATTAATAACAATCAAAGTTCTTCACAAGATCCATTTGCTGGATCAGGT
GATACTATTGATATTTCTGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.857

100

0.64
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.056

100

0.57