Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   AB5J52_RS26455 Genome accession   NZ_CP163441
Coordinates   5837077..5838486 (-) Length   469 a.a.
NCBI ID   WP_369224309.1    Uniprot ID   -
Organism   Streptomyces sp. R39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5832077..5843486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J52_RS26430 (AB5J52_26430) - 5832127..5832795 (-) 669 WP_369224303.1 hypothetical protein -
  AB5J52_RS26435 (AB5J52_26435) - 5832783..5833322 (-) 540 WP_181804400.1 SigE family RNA polymerase sigma factor -
  AB5J52_RS26440 (AB5J52_26440) - 5833599..5834474 (-) 876 WP_369224305.1 A/G-specific adenine glycosylase -
  AB5J52_RS26445 (AB5J52_26445) - 5834719..5835576 (+) 858 WP_369224307.1 hypothetical protein -
  AB5J52_RS26450 (AB5J52_26450) disA 5835872..5836996 (-) 1125 WP_234544468.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  AB5J52_RS26455 (AB5J52_26455) radA/sms 5837077..5838486 (-) 1410 WP_369224309.1 DNA repair protein RadA Machinery gene
  AB5J52_RS26460 (AB5J52_26460) - 5838694..5840397 (+) 1704 WP_369224311.1 hypothetical protein -
  AB5J52_RS26465 (AB5J52_26465) - 5840887..5841753 (-) 867 WP_369224313.1 hypothetical protein -
  AB5J52_RS26470 (AB5J52_26470) - 5841834..5842766 (+) 933 WP_369224315.1 Ppx/GppA family phosphatase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49555.72 Da        Isoelectric Point: 8.0026

>NTDB_id=925444 AB5J52_RS26455 WP_369224309.1 5837077..5838486(-) (radA/sms) [Streptomyces sp. R39]
MAARTKTSKDRPSYRCTECGWQTAKWLGRCAECQAWGTVEEYGAPAVRTTAPGRVTTSAVPIGQVDGRQATARTTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIGAIDDHLYLAAETDLAAVL
GHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLQF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKIPAGMKVLEVADMGDALRVLPRSRRREAPREAEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=925444 AB5J52_RS26455 WP_369224309.1 5837077..5838486(-) (radA/sms) [Streptomyces sp. R39]
ATGGCTGCCCGTACCAAGACCTCGAAGGACCGTCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGGTGCGCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCCGTCCGGACGACGGCCCCCGGCC
GGGTCACCACCTCCGCGGTGCCCATCGGCCAGGTCGACGGCCGTCAGGCCACCGCCCGCACCACCGGCGTGCCCGAGCTG
GACCGGGTCCTCGGCGGCGGCCTGGTTCCCGGCGCGGTGGTGCTGCTCGCCGGGGAGCCCGGCGTCGGCAAGTCCACCCT
CCTCCTCGACGTGGCGGCCAAGGCGGCCAGTGACGAGCACCGCACCCTCTATGTCACCGGCGAGGAGTCGGCCAGCCAGG
TCCGGCTGCGCGCCGACCGCATCGGCGCCATCGACGACCACCTCTACCTCGCCGCCGAGACCGATCTGGCCGCCGTCCTC
GGTCACCTGGACGCGGTGAAGCCGTCACTGCTGGTCCTGGACTCCGTGCAGACGGTCGCCTCCCCGGAGATCGACGGCGC
CCCCGGCGGCATGGCCCAGGTCCGCGAGGTGGCCGGGGCGCTCATCCGCGCCTCCAAGGAGCGGGGCATGTCCACCCTGC
TCGTGGGCCATGTCACCAAGGACGGCGCGATCGCCGGCCCCCGCCTGCTGGAACACCTGGTGGACGTCGTCCTGCAATTC
GAGGGCGACCGGCATGCCCGTCTGCGCCTGGTCCGGGGCGTCAAGAACCGCTACGGCGCCACCGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCACGGGCCTCGCCGACCCCAGCGGACTTTTCCTGACCCGCCGTGCCGAACCGGTCCCCG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCCCTGGTCGCCGAGGTGCAGGCGCTGACGGTCGACTCCCAGATC
CCCTCACCGCGCCGGACCACCTCCGGCCTGGAGACCTCCCGGGTCTCGATGATGCTGGCCGTCCTGGAGCAGCGCGGCCG
GATCAGCGCGCTCGGCAAGCGGGACATCTACTCCGCGACCGTCGGCGGGGTGAAGCTCTCCGAGCCCGCGGCCGACCTGG
CCATCGCCCTCGCCCTGGCCTCCGCCGCCAGCGACACCCCGCTCCCGAAGAACCTGGTCGCCATCGGCGAGGTCGGCCTC
GCGGGCGAGGTCAGACGGGTCACCGGGGTCCAGCGCAGGCTCGCGGAGGCGCACCGGCTCGGTTTCACGCACGCGCTCGT
GCCGGGCGATCCCGGCAAGATCCCGGCGGGCATGAAGGTCCTGGAAGTCGCCGACATGGGGGATGCGCTGCGGGTGCTGC
CGCGCTCCCGTCGCCGAGAGGCCCCACGGGAGGCGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.488

96.588

0.42
  radA Streptococcus pneumoniae Rx1

42.444

95.949

0.407
  radA Streptococcus pneumoniae D39

42.444

95.949

0.407
  radA Streptococcus pneumoniae R6

42.444

95.949

0.407
  radA Streptococcus pneumoniae TIGR4

42.444

95.949

0.407
  radA Streptococcus mitis SK321

43.897

90.832

0.399
  radA Streptococcus mitis NCTC 12261

43.897

90.832

0.399