Detailed information    

insolico Bioinformatically predicted

Overview


Name   disA   Type   Machinery gene
Locus tag   AB5J52_RS26450 Genome accession   NZ_CP163441
Coordinates   5835872..5836996 (-) Length   374 a.a.
NCBI ID   WP_234544468.1    Uniprot ID   -
Organism   Streptomyces sp. R39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 5830872..5841996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J52_RS26425 (AB5J52_26425) cseB 5831391..5832095 (-) 705 WP_234544472.1 two-component system response regulator CseB -
  AB5J52_RS26430 (AB5J52_26430) - 5832127..5832795 (-) 669 WP_369224303.1 hypothetical protein -
  AB5J52_RS26435 (AB5J52_26435) - 5832783..5833322 (-) 540 WP_181804400.1 SigE family RNA polymerase sigma factor -
  AB5J52_RS26440 (AB5J52_26440) - 5833599..5834474 (-) 876 WP_369224305.1 A/G-specific adenine glycosylase -
  AB5J52_RS26445 (AB5J52_26445) - 5834719..5835576 (+) 858 WP_369224307.1 hypothetical protein -
  AB5J52_RS26450 (AB5J52_26450) disA 5835872..5836996 (-) 1125 WP_234544468.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  AB5J52_RS26455 (AB5J52_26455) radA/sms 5837077..5838486 (-) 1410 WP_369224309.1 DNA repair protein RadA Machinery gene
  AB5J52_RS26460 (AB5J52_26460) - 5838694..5840397 (+) 1704 WP_369224311.1 hypothetical protein -
  AB5J52_RS26465 (AB5J52_26465) - 5840887..5841753 (-) 867 WP_369224313.1 hypothetical protein -

Sequence


Protein


Download         Length: 374 a.a.        Molecular weight: 40030.78 Da        Isoelectric Point: 4.9989

>NTDB_id=925443 AB5J52_RS26450 WP_234544468.1 5835872..5836996(-) (disA) [Streptomyces sp. R39]
MAANDRAGAPGKSGGSAGSDGLMRASLSAVAPGTSMRDGLERVLRGNTGGLIVLGFDKTVEAMCTGGFVLDVEFTATRLR
ELCKLDGGIVISSDLSKILRAGVQFVPDATIPTEETGTRHRTADRVSKQVGFPVVSVSQSMRLVALYVAGQRRVLEDSAA
ILSRANQALATLERYKLRLDEVAGTLSALEIEDLVTVRDVSAVAQRLEMVRRIATEIAEYVVELGTDGRLLALQLDELIA
GVEPERELVVRDYVPEPTAKRSRTVDEALYELDALSHAELLELPTVAKALGYTGSPEALDSAVSPRGFRLLAKVPRLPGA
IIDRLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGLSRLAESSILERYV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=925443 AB5J52_RS26450 WP_234544468.1 5835872..5836996(-) (disA) [Streptomyces sp. R39]
GTGGCAGCCAACGACCGGGCAGGAGCTCCCGGGAAGTCCGGTGGGAGTGCCGGTTCCGATGGCCTGATGCGCGCCTCGCT
GAGCGCCGTGGCTCCGGGCACGTCCATGCGGGACGGCCTGGAGCGGGTCCTCCGCGGCAACACGGGCGGGCTCATCGTCC
TCGGCTTCGACAAGACGGTCGAGGCGATGTGCACGGGCGGTTTCGTGCTGGATGTCGAGTTCACGGCGACCCGGCTGCGG
GAGCTGTGCAAACTCGACGGCGGCATCGTGATCTCCTCCGACCTGTCGAAGATCCTTCGGGCGGGCGTGCAGTTCGTGCC
CGACGCGACGATCCCCACGGAGGAGACAGGCACCCGCCACCGCACGGCGGACCGCGTCTCCAAGCAGGTCGGCTTCCCGG
TGGTCTCGGTCTCCCAGTCGATGCGGCTGGTCGCGCTGTACGTCGCCGGTCAGCGCCGCGTCCTGGAGGACTCGGCGGCG
ATCCTCTCCCGCGCGAACCAGGCGCTGGCGACGCTGGAGCGGTACAAGCTCCGCCTGGACGAGGTCGCGGGAACGCTGTC
GGCACTGGAGATCGAGGACCTGGTGACGGTCCGCGACGTGTCCGCCGTCGCGCAGCGCCTTGAGATGGTCCGCCGGATCG
CCACGGAGATCGCCGAGTACGTGGTCGAACTGGGCACCGACGGGCGGCTTCTCGCGCTCCAGCTGGACGAGCTGATCGCC
GGGGTCGAGCCGGAGCGCGAGCTGGTGGTCCGGGACTATGTGCCCGAGCCGACGGCGAAACGCTCCCGTACGGTCGATGA
GGCACTGTACGAGCTGGATGCCCTCAGCCATGCGGAGCTGCTGGAACTGCCGACGGTGGCAAAGGCGTTGGGGTACACGG
GTTCGCCGGAGGCGCTGGACTCCGCGGTGTCGCCGCGCGGCTTCCGGCTGCTGGCGAAGGTGCCGAGGCTGCCCGGGGCG
ATCATCGACCGGCTGGTGGAGCACTTCGGCGGCCTGCAGAAGCTGCTCGCCGCGAGCGTCGACGATCTCCAGACCGTGGA
CGGCGTCGGCGAGGCCCGCGCCCGAAGCGTGCGCGAGGGGCTGTCCCGGCTGGCGGAGTCTTCGATTCTTGAACGGTATG
TCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  disA Bacillus subtilis subsp. subtilis str. 168

46.532

92.513

0.43