Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AB5J52_RS25475 Genome accession   NZ_CP163441
Coordinates   5615605..5616204 (+) Length   199 a.a.
NCBI ID   WP_369224089.1    Uniprot ID   -
Organism   Streptomyces sp. R39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5610605..5621204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J52_RS25455 (AB5J52_25455) - 5610806..5612614 (+) 1809 WP_369224083.1 serine/threonine-protein kinase -
  AB5J52_RS25460 (AB5J52_25460) - 5612654..5613808 (-) 1155 WP_369224085.1 Gfo/Idh/MocA family protein -
  AB5J52_RS25465 (AB5J52_25465) - 5614130..5614885 (-) 756 WP_369224087.1 SLATT domain-containing protein -
  AB5J52_RS25470 (AB5J52_25470) - 5615149..5615511 (+) 363 WP_369228206.1 YbaB/EbfC family nucleoid-associated protein -
  AB5J52_RS25475 (AB5J52_25475) recR 5615605..5616204 (+) 600 WP_369224089.1 recombination mediator RecR Machinery gene
  AB5J52_RS25480 (AB5J52_25480) - 5616197..5616859 (+) 663 WP_369224091.1 DUF5063 domain-containing protein -
  AB5J52_RS25485 (AB5J52_25485) - 5616927..5617490 (+) 564 WP_369224093.1 VOC family protein -
  AB5J52_RS25490 (AB5J52_25490) - 5617523..5618335 (+) 813 WP_369224094.1 helix-turn-helix domain-containing protein -
  AB5J52_RS25495 (AB5J52_25495) - 5618328..5618570 (+) 243 WP_369224096.1 DUF397 domain-containing protein -
  AB5J52_RS25500 (AB5J52_25500) - 5618869..5619846 (+) 978 WP_369224098.1 hypothetical protein -
  AB5J52_RS25505 (AB5J52_25505) - 5619897..5620475 (+) 579 WP_369224099.1 Uma2 family endonuclease -
  AB5J52_RS25510 (AB5J52_25510) - 5620530..5620655 (-) 126 Protein_5032 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21762.11 Da        Isoelectric Point: 4.9909

>NTDB_id=925438 AB5J52_RS25475 WP_369224089.1 5615605..5616204(+) (recR) [Streptomyces sp. R39]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALLEVKAKVRFCAACGNVAQEELCNICRDTRRDPTV
ICVVEEPKDVVAVERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=925438 AB5J52_RS25475 WP_369224089.1 5615605..5616204(+) (recR) [Streptomyces sp. R39]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAGTTGGGGCGGCTGCCCGGCGTCGGTCCGAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAGCCGACGGACGTACGGCGTCTCGCGCAGGCTCTCCTGGAGGTGAAGGCGAAGGTCC
GCTTCTGCGCGGCCTGCGGCAACGTGGCACAGGAGGAACTGTGCAACATCTGCCGTGACACCCGCCGCGACCCCACCGTC
ATCTGCGTGGTGGAGGAGCCGAAGGACGTCGTCGCGGTCGAGCGCACGCGCGAGTTCCGCGGCCGCTACCACGTGCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCCGACGACCTCCGGATAAGAGAGCTGCTCGCCCGCCTGGCGGACGGCA
CGGTCACCGAGCTGATCCTCGCCACGGACCCGAACCTGGAGGGCGAGGCGACCGCCACCTACCTCGCCCGCATGATCAAA
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGCGGCGACCTGGAATACGCGGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462