Detailed information NTG0925311

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: AB5J50_RS04500
• Genome accession: NZ_CP163440
• Coordinates: 900231..900884 (+)
• Length: 217 a.a.
• NCBI ID: WP_327426305.1
• Uniprot ID: -
• Organism: Streptomyces sp. R35
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 895231..905884

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5J50_RS04475 (AB5J50_04475)	-	895503..895964 (-)	462	WP_369255082.1	hypothetical protein	-
AB5J50_RS04480 (AB5J50_04480)	-	896394..897597 (+)	1204	Protein_892	ABC transporter ATP-binding protein	-
AB5J50_RS04485 (AB5J50_04485)	-	897721..898203 (-)	483	WP_327426302.1	VOC family protein	-
AB5J50_RS04490 (AB5J50_04490)	-	898328..899524 (+)	1197	WP_369255084.1	epoxide hydrolase family protein	-
AB5J50_RS04495 (AB5J50_04495)	-	899656..900093 (+)	438	WP_369255086.1	(2Fe-2S) ferredoxin domain-containing protein	-
AB5J50_RS04500 (AB5J50_04500)	clpP	900231..900884 (+)	654	WP_327426305.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J50_RS04505 (AB5J50_04505)	clpP	900886..901488 (+)	603	WP_369255088.1	ClpP family protease	Regulator
AB5J50_RS04510 (AB5J50_04510)	-	901529..901981 (-)	453	WP_369255090.1	helix-turn-helix domain-containing protein	-
AB5J50_RS04515 (AB5J50_04515)	-	902063..902584 (-)	522	WP_369265306.1	DinB family protein	-
AB5J50_RS04520 (AB5J50_04520)	-	902743..903225 (+)	483	WP_369255092.1	hypothetical protein	-
AB5J50_RS04525 (AB5J50_04525)	-	903280..905016 (+)	1737	WP_369255094.1	multicopper oxidase domain-containing protein	-

Sequence

Protein

• Length: 217 a.a.
• Molecular weight: 23643.72 Da
• Isoelectric Point: 5.0887

>NTDB_id=925311 AB5J50_RS04500 WP_327426305.1 900231..900884(+) (clpP) [Streptomyces sp. R35]
MTPLITGWNPARAPRAEEGDTPPSRFDDHLAAQLLAQRIVFLGTQVDEVSANRVCAQLLLLSAEDARTDISLYLNSPGGS
VTAGLAIYDTMRLIPNDVSTLAMGFAASMGQFLLSVGTHGKRFALPNARIMMHQPSAGIGGTTADIEIQAQNLEFTKKAI
ERITAEHTGQSEETISRDGDRDRWFTAEQAKEYGMVDRVVESLDDVRPAASRRRMGL

Nucleotide

• Length: 654 bp

>NTDB_id=925311 AB5J50_RS04500 WP_327426305.1 900231..900884(+) (clpP) [Streptomyces sp. R35]
ATGACTCCACTCATCACCGGCTGGAACCCGGCCCGTGCGCCACGGGCCGAGGAGGGCGACACCCCTCCGTCACGCTTCGA
CGACCATCTGGCCGCGCAGCTGCTCGCCCAGCGGATCGTCTTTCTCGGCACGCAGGTCGACGAGGTCTCCGCGAACCGGG
TCTGCGCGCAACTGCTCCTGCTGTCGGCGGAGGACGCGCGGACCGACATCAGCCTGTACCTCAACAGTCCGGGCGGATCG
GTGACCGCGGGCCTCGCGATCTACGACACGATGCGGCTGATCCCGAACGACGTCTCGACCCTCGCCATGGGATTCGCGGC
GAGCATGGGCCAGTTCCTGCTCAGTGTGGGCACGCACGGGAAGCGTTTCGCACTGCCGAACGCGCGGATCATGATGCACC
AGCCGTCGGCCGGCATCGGTGGCACGACCGCCGACATCGAAATCCAGGCGCAGAACCTGGAGTTCACGAAGAAGGCCATC
GAGCGGATCACCGCGGAGCACACCGGCCAGAGCGAGGAGACGATCTCCCGGGACGGCGACCGCGACCGCTGGTTCACGGC
CGAGCAGGCCAAGGAATACGGCATGGTGGACCGGGTCGTGGAGTCGCTCGACGACGTCCGCCCGGCCGCGTCACGGCGAC
GGATGGGACTCTGA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (30-201)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	48.315	82.028	0.396
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	49.419	79.263	0.392
clpP	Lactococcus lactis subsp. cremoris KW2	47.429	80.645	0.382
clpP	Streptococcus pneumoniae R6	47.977	79.724	0.382
clpP	Streptococcus pneumoniae TIGR4	47.977	79.724	0.382
clpP	Streptococcus pneumoniae Rx1	47.977	79.724	0.382
clpP	Streptococcus pneumoniae D39	47.977	79.724	0.382
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	46.857	80.645	0.378
clpP	Streptococcus pyogenes JRS4	46.857	80.645	0.378
clpP	Streptococcus pyogenes MGAS315	46.857	80.645	0.378
clpP	Streptococcus thermophilus LMG 18311	46.243	79.724	0.369
clpP	Streptococcus thermophilus LMD-9	46.243	79.724	0.369
clpP	Streptococcus mutans UA159	45.143	80.645	0.364