Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   AB5J50_RS06055 Genome accession   NZ_CP163440
Coordinates   1240548..1240721 (-) Length   57 a.a.
NCBI ID   WP_369265322.1    Uniprot ID   -
Organism   Streptomyces sp. R35     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1235548..1245721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J50_RS06035 (AB5J50_06035) - 1235776..1236501 (+) 726 WP_369255592.1 GntR family transcriptional regulator -
  AB5J50_RS06040 (AB5J50_06040) - 1236479..1237453 (-) 975 WP_369255594.1 anti-sigma factor RsbA family regulatory protein -
  AB5J50_RS06045 (AB5J50_06045) - 1237450..1238361 (-) 912 WP_369255596.1 MEDS domain-containing protein -
  AB5J50_RS06050 (AB5J50_06050) - 1238479..1240545 (+) 2067 WP_369255598.1 AAA family ATPase -
  AB5J50_RS06055 (AB5J50_06055) tfoS 1240548..1240721 (-) 174 WP_369265322.1 AraC family transcriptional regulator Regulator
  AB5J50_RS06060 (AB5J50_06060) - 1241017..1241433 (+) 417 WP_369255600.1 response regulator transcription factor -
  AB5J50_RS06065 (AB5J50_06065) - 1241509..1242342 (+) 834 WP_327426575.1 alpha/beta hydrolase -
  AB5J50_RS06070 (AB5J50_06070) - 1242401..1243222 (+) 822 WP_369255602.1 alpha/beta fold hydrolase -
  AB5J50_RS06075 (AB5J50_06075) - 1243322..1243483 (+) 162 WP_369255604.1 hypothetical protein -
  AB5J50_RS06080 (AB5J50_06080) - 1243551..1243832 (-) 282 WP_369255606.1 hypothetical protein -
  AB5J50_RS06085 (AB5J50_06085) - 1244051..1244740 (-) 690 WP_369255608.1 SDR family oxidoreductase -
  AB5J50_RS06090 (AB5J50_06090) - 1244880..1245671 (-) 792 WP_369255610.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 57 a.a.        Molecular weight: 6447.30 Da        Isoelectric Point: 11.7168

>NTDB_id=925313 AB5J50_RS06055 WP_369265322.1 1240548..1240721(-) (tfoS) [Streptomyces sp. R35]
MIEQRLEGARSTLASPVGRTRTIGSVARAWGFTDPSHFTRRFKEAYGVTPQEWPRAL

Nucleotide


Download         Length: 174 bp        

>NTDB_id=925313 AB5J50_RS06055 WP_369265322.1 1240548..1240721(-) (tfoS) [Streptomyces sp. R35]
ATCATCGAGCAGCGGCTCGAAGGCGCCCGCTCCACCCTGGCCTCACCGGTCGGCCGCACCCGCACCATCGGCTCGGTCGC
CCGCGCCTGGGGATTCACCGACCCCAGCCACTTCACGCGCCGCTTCAAGGAGGCGTACGGGGTGACACCGCAGGAGTGGC
CCAGGGCTCTGTAA

Domains

Predicted by InterProScan.

Bacterial regulatory helix-turn-helix proteins, AraC family (HTH_AraC)

(22-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

41.176

89.474

0.368