Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   VKP40_RS06905 Genome accession   NZ_CP142355
Coordinates   1374715..1375524 (-) Length   269 a.a.
NCBI ID   WP_002985641.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain A946     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1369715..1380524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP40_RS06895 (VKP40_06895) smc 1370040..1373579 (-) 3540 WP_111686203.1 chromosome segregation protein SMC -
  VKP40_RS06900 (VKP40_06900) rnc 1373580..1374272 (-) 693 WP_002985639.1 ribonuclease III -
  VKP40_RS06905 (VKP40_06905) vicX 1374715..1375524 (-) 810 WP_002985641.1 MBL fold metallo-hydrolase Regulator
  VKP40_RS06910 (VKP40_06910) vicK 1375528..1376880 (-) 1353 WP_002985643.1 cell wall metabolism sensor histidine kinase VicK Regulator
  VKP40_RS06915 (VKP40_06915) vicR 1376873..1377583 (-) 711 WP_002985645.1 response regulator YycF Regulator
  VKP40_RS06920 (VKP40_06920) - 1377745..1378779 (-) 1035 WP_011284595.1 DUF3114 domain-containing protein -
  VKP40_RS06925 (VKP40_06925) - 1378835..1380082 (-) 1248 WP_032464244.1 AMP-binding protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30095.20 Da        Isoelectric Point: 5.5314

>NTDB_id=925282 VKP40_RS06905 WP_002985641.1 1374715..1375524(-) (vicX) [Streptococcus pyogenes strain A946]
MNESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
IYANEKTWQLMDECNMLGKLDASQKHIFQRDKVLTFGDVDIESFGVSHDAIDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGYNTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=925282 VKP40_RS06905 WP_002985641.1 1374715..1375524(-) (vicX) [Streptococcus pyogenes strain A946]
ATGAATGAGAGTGGTTTTAAATATAGTATTTTAGCATCTGGGTCCACAGGAAATTGTTTTTATTTAGAAACACCTAAAAA
ACGCTTATTGATTGATGCAGGGCTTACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGCAAACCTGAGGATT
TGGATGCTATTTTGATTACCCATGAGCACTCTGATCATATTAAGGGTGTAGGCGTTATGGCCCGCAAATACCATTTGGAT
ATCTATGCTAATGAAAAAACATGGCAGCTGATGGATGAGTGCAATATGCTAGGTAAGCTTGATGCCTCACAAAAACATAT
TTTCCAAAGGGATAAAGTTTTGACCTTTGGAGATGTTGATATCGAAAGTTTTGGAGTCAGCCATGACGCTATTGATCCTC
AATTTTATCGGATTATGAAAGATAATAAGTCTTTTGTGATGTTGACAGATACAGGATATGTCAGTGATAGGATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAATCCAATCATGATATTGAAATTTTGAGATCAGGCTCTTATCCTTGGAG
CTTGAAGCAGCGTATTTTATCTGATTTAGGACATTTATCAAATGAAGATGGAGCGGGAGCCATGATTAGAAGCCTGGGGT
ACAATACCAAAAAAATATACCTAGGTCATCTGAGTAAAGAAAATAACATCAAAGAGTTAGCGCATATGACGATGGTCAAT
CAACTGGCTATGGCAGATTTAGCAGTAGGTACAGACTTTACGGTCCATGATACCTCTCCAGATACTGCTTGTCCATTAAC
TGATATTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.836

100

0.758