Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   VKP53_RS09030 Genome accession   NZ_CP142354
Coordinates   54401..54496 (+) Length   31 a.a.
NCBI ID   WP_198462994.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 6745-99     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 49401..59496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP53_RS00320 (VKP53_00320) - 50121..50669 (+) 549 WP_228631688.1 hypothetical protein -
  VKP53_RS00325 (VKP53_00325) - 50680..51048 (+) 369 WP_228631690.1 hypothetical protein -
  VKP53_RS00330 (VKP53_00330) - 51051..51620 (+) 570 WP_032460531.1 hypothetical protein -
  VKP53_RS00335 (VKP53_00335) - 51807..51986 (+) 180 WP_032460530.1 hypothetical protein -
  VKP53_RS00340 (VKP53_00340) purB 51983..53275 (+) 1293 WP_326674817.1 adenylosuccinate lyase -
  VKP53_RS00345 (VKP53_00345) comR 53406..54317 (+) 912 WP_002986681.1 transcriptional regulator Rgg4/ComR Regulator
  VKP53_RS09030 comS 54401..54496 (+) 96 WP_198462994.1 quorum-sensing system DWW-type pheromone Regulator
  VKP53_RS00350 (VKP53_00350) ruvB 54543..55541 (+) 999 WP_002986679.1 Holliday junction branch migration DNA helicase RuvB -
  VKP53_RS00355 (VKP53_00355) - 55679..56116 (+) 438 WP_002994668.1 low molecular weight protein-tyrosine-phosphatase -
  VKP53_RS00360 (VKP53_00360) - 56139..56540 (+) 402 WP_032460528.1 MORN repeat-containing protein -
  VKP53_RS00365 (VKP53_00365) - 56537..58312 (+) 1776 WP_032460527.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 31 a.a.        Molecular weight: 3857.66 Da        Isoelectric Point: 10.0436

>NTDB_id=925243 VKP53_RS09030 WP_198462994.1 54401..54496(+) (comS) [Streptococcus pyogenes strain 6745-99]
MLKKYKYYFIFAALLSFKVVQELSAVDWWRL

Nucleotide


Download         Length: 96 bp        

>NTDB_id=925243 VKP53_RS09030 WP_198462994.1 54401..54496(+) (comS) [Streptococcus pyogenes strain 6745-99]
ATGTTAAAAAAGTATAAGTACTATTTTATATTCGCAGCTCTACTATCTTTTAAAGTAGTTCAAGAGCTTAGTGCTGTTGA
CTGGTGGCGATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

100

100

1
  comS Streptococcus pyogenes MGAS315

45.161

100

0.452