Detailed information
Bioinformatically predicted
Overview
| Name | clpP | Type | Regulator |
| Locus tag | AB5J49_RS06515 | Genome accession | NZ_CP163439 |
| Coordinates | 1525786..1526421 (+) | Length | 211 a.a. |
| NCBI ID | WP_369167481.1 | Uniprot ID | - |
| Organism | Streptomyces sp. R28 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1520786..1531421
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB5J49_RS06485 (AB5J49_06485) | - | 1521101..1522822 (-) | 1722 | WP_369167477.1 | urease subunit alpha | - |
| AB5J49_RS06490 (AB5J49_06490) | - | 1522815..1523126 (-) | 312 | WP_369167478.1 | urease subunit beta | - |
| AB5J49_RS06495 (AB5J49_06495) | - | 1523138..1523440 (-) | 303 | WP_010355509.1 | urease subunit gamma | - |
| AB5J49_RS06500 (AB5J49_06500) | - | 1523574..1524203 (-) | 630 | WP_369167479.1 | TetR/AcrR family transcriptional regulator | - |
| AB5J49_RS06505 (AB5J49_06505) | - | 1524324..1525307 (+) | 984 | WP_369167480.1 | ABC transporter permease | - |
| AB5J49_RS06510 (AB5J49_06510) | - | 1525430..1525717 (-) | 288 | WP_274237288.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| AB5J49_RS06515 (AB5J49_06515) | clpP | 1525786..1526421 (+) | 636 | WP_369167481.1 | ATP-dependent Clp protease proteolytic subunit | Regulator |
| AB5J49_RS06520 (AB5J49_06520) | - | 1526429..1526737 (+) | 309 | WP_369167482.1 | hypothetical protein | - |
| AB5J49_RS06525 (AB5J49_06525) | - | 1527291..1527764 (+) | 474 | WP_369167483.1 | C40 family peptidase | - |
| AB5J49_RS06530 (AB5J49_06530) | - | 1527852..1528466 (-) | 615 | WP_369167484.1 | LysE family translocator | - |
| AB5J49_RS06535 (AB5J49_06535) | - | 1528583..1529506 (+) | 924 | WP_369167485.1 | LysR family transcriptional regulator | - |
| AB5J49_RS06540 (AB5J49_06540) | - | 1529510..1529968 (-) | 459 | WP_274237294.1 | ATP-binding protein | - |
| AB5J49_RS06545 (AB5J49_06545) | - | 1530182..1531060 (+) | 879 | WP_369167486.1 | helix-turn-helix domain-containing protein | - |
| AB5J49_RS06550 (AB5J49_06550) | - | 1531070..1531297 (+) | 228 | WP_062704375.1 | DUF397 domain-containing protein | - |
Sequence
Protein
Download Length: 211 a.a. Molecular weight: 23230.39 Da Isoelectric Point: 5.3361
>NTDB_id=925236 AB5J49_RS06515 WP_369167481.1 1525786..1526421(+) (clpP) [Streptomyces sp. R28]
MTRPTARHVLPEFTERTSFGTRTQDPYSKLLEERIVFLGTQIDDISANDVMAQFMYLEHKEPGQDISLYINSPGGSFSAM
TAIYDTMQFVTCDVETICLGQAGASGAVLLAAGTPGKRFALPGARMVIHQPGLPEPIQGQASDLAIQADELTRVRTRLEE
LLARHTGRSREQVSQDIERDKILSAQEALEYGLVDRIIPSRKATLTPPTGR
MTRPTARHVLPEFTERTSFGTRTQDPYSKLLEERIVFLGTQIDDISANDVMAQFMYLEHKEPGQDISLYINSPGGSFSAM
TAIYDTMQFVTCDVETICLGQAGASGAVLLAAGTPGKRFALPGARMVIHQPGLPEPIQGQASDLAIQADELTRVRTRLEE
LLARHTGRSREQVSQDIERDKILSAQEALEYGLVDRIIPSRKATLTPPTGR
Nucleotide
Download Length: 636 bp
>NTDB_id=925236 AB5J49_RS06515 WP_369167481.1 1525786..1526421(+) (clpP) [Streptomyces sp. R28]
ATGACCCGACCGACCGCCCGCCACGTACTGCCCGAGTTCACCGAGCGCACGAGTTTCGGCACCAGGACGCAGGACCCGTA
CTCGAAGCTGCTGGAGGAACGGATCGTCTTTCTCGGCACGCAGATCGACGACATCTCGGCGAACGACGTGATGGCCCAGT
TCATGTACCTGGAGCACAAGGAGCCCGGACAGGACATCTCGCTGTACATCAACTCGCCCGGCGGCTCGTTCAGCGCCATG
ACGGCGATCTACGACACGATGCAGTTCGTCACCTGTGACGTGGAGACGATCTGCCTGGGCCAGGCCGGGGCATCCGGCGC
GGTACTGCTGGCCGCGGGCACTCCGGGGAAGCGATTCGCGCTGCCCGGGGCCCGTATGGTGATCCATCAGCCGGGGCTGC
CCGAGCCGATCCAGGGACAGGCGAGCGATCTGGCCATCCAGGCCGACGAACTGACGCGCGTTCGGACCCGCCTGGAGGAG
TTGCTCGCCCGGCACACCGGGCGCAGCCGCGAGCAGGTGAGCCAGGACATCGAGCGGGACAAGATTCTCAGCGCCCAGGA
GGCGCTGGAGTACGGGCTGGTGGACCGGATCATCCCCAGCCGCAAGGCCACCCTCACCCCGCCGACGGGGCGGTGA
ATGACCCGACCGACCGCCCGCCACGTACTGCCCGAGTTCACCGAGCGCACGAGTTTCGGCACCAGGACGCAGGACCCGTA
CTCGAAGCTGCTGGAGGAACGGATCGTCTTTCTCGGCACGCAGATCGACGACATCTCGGCGAACGACGTGATGGCCCAGT
TCATGTACCTGGAGCACAAGGAGCCCGGACAGGACATCTCGCTGTACATCAACTCGCCCGGCGGCTCGTTCAGCGCCATG
ACGGCGATCTACGACACGATGCAGTTCGTCACCTGTGACGTGGAGACGATCTGCCTGGGCCAGGCCGGGGCATCCGGCGC
GGTACTGCTGGCCGCGGGCACTCCGGGGAAGCGATTCGCGCTGCCCGGGGCCCGTATGGTGATCCATCAGCCGGGGCTGC
CCGAGCCGATCCAGGGACAGGCGAGCGATCTGGCCATCCAGGCCGACGAACTGACGCGCGTTCGGACCCGCCTGGAGGAG
TTGCTCGCCCGGCACACCGGGCGCAGCCGCGAGCAGGTGAGCCAGGACATCGAGCGGGACAAGATTCTCAGCGCCCAGGA
GGCGCTGGAGTACGGGCTGGTGGACCGGATCATCCCCAGCCGCAAGGCCACCCTCACCCCGCCGACGGGGCGGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpP | Bacillus subtilis subsp. subtilis str. 168 |
48.168 |
90.521 |
0.436 |
| clpP | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
47.09 |
89.573 |
0.422 |
| clpP | Streptococcus pneumoniae Rx1 |
45.078 |
91.469 |
0.412 |
| clpP | Streptococcus pneumoniae D39 |
45.078 |
91.469 |
0.412 |
| clpP | Streptococcus pneumoniae R6 |
45.078 |
91.469 |
0.412 |
| clpP | Streptococcus pneumoniae TIGR4 |
45.078 |
91.469 |
0.412 |
| clpP | Lactococcus lactis subsp. cremoris KW2 |
44.103 |
92.417 |
0.408 |
| clpP | Streptococcus thermophilus LMD-9 |
44.33 |
91.943 |
0.408 |
| clpP | Streptococcus thermophilus LMG 18311 |
44.33 |
91.943 |
0.408 |
| clpP | Streptococcus pyogenes JRS4 |
43.814 |
91.943 |
0.403 |
| clpP | Streptococcus pyogenes MGAS315 |
43.814 |
91.943 |
0.403 |
| clpP | Lactococcus lactis subsp. lactis strain DGCC12653 |
43.299 |
91.943 |
0.398 |
| clpP | Streptococcus mutans UA159 |
42.268 |
91.943 |
0.389 |