Detailed information    

insolico Bioinformatically predicted

Overview


Name   disA   Type   Machinery gene
Locus tag   AB5J56_RS20130 Genome accession   NZ_CP163435
Coordinates   4509954..4511078 (+) Length   374 a.a.
NCBI ID   WP_369234116.1    Uniprot ID   -
Organism   Streptomyces sp. R21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 4504954..4516078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J56_RS20115 (AB5J56_20110) - 4505240..4506634 (+) 1395 WP_369234113.1 alpha/beta hydrolase -
  AB5J56_RS20120 (AB5J56_20115) - 4506794..4508380 (+) 1587 WP_369234114.1 MFS transporter -
  AB5J56_RS20125 (AB5J56_20120) radA/sms 4508476..4509885 (+) 1410 WP_369234115.1 DNA repair protein RadA Machinery gene
  AB5J56_RS20130 (AB5J56_20125) disA 4509954..4511078 (+) 1125 WP_369234116.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  AB5J56_RS20135 (AB5J56_20130) - 4511334..4512149 (-) 816 WP_369234117.1 hypothetical protein -
  AB5J56_RS20140 (AB5J56_20135) - 4512406..4513326 (+) 921 WP_369234118.1 A/G-specific adenine glycosylase -
  AB5J56_RS20145 (AB5J56_20140) - 4513611..4514162 (+) 552 WP_369234119.1 SigE family RNA polymerase sigma factor -
  AB5J56_RS20150 (AB5J56_20145) - 4514150..4514800 (+) 651 WP_369234120.1 hypothetical protein -
  AB5J56_RS20155 (AB5J56_20150) cseB 4514905..4515624 (+) 720 WP_369234121.1 two-component system response regulator CseB -

Sequence


Protein


Download         Length: 374 a.a.        Molecular weight: 40202.95 Da        Isoelectric Point: 4.9234

>NTDB_id=925176 AB5J56_RS20130 WP_369234116.1 4509954..4511078(+) (disA) [Streptomyces sp. R21]
MAANDRAAAPGKSGGSSGADGLMRASLSAVAPGTSLRDGLERILRGNTGGLIVLGWDKTVESMCTGGFVLDVDFSATRLR
ELCKLDGGIVVDKDITKILRAGVQLVPDPTIPTEETGTRHRTADRVSKQVGFPVVSVSQSMRLIALYVDGQRRVLEDSAA
ILSRANQALATLERYKLRLDEVAGTLSALEIEDLVTVRDVSAVAQRLEMVRRIATEIAEYVVELGTDGRLLALQLDELIA
GVEPERELVVRDYVPEPTAKRSRTVDEALFELDALTHAELLELSTVARALGYTGSPEALDSAVSPRGFRLLAKVPRLPGA
IIDRLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGLSRLAESSILERYV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=925176 AB5J56_RS20130 WP_369234116.1 4509954..4511078(+) (disA) [Streptomyces sp. R21]
GTGGCAGCCAACGACCGGGCAGCAGCTCCCGGAAAGTCCGGTGGGAGCTCCGGTGCCGATGGCCTGATGCGCGCCTCACT
GAGCGCCGTGGCACCCGGCACGTCGCTGCGCGACGGGCTTGAGCGGATTCTCCGCGGCAACACCGGTGGTCTCATCGTGC
TCGGCTGGGACAAGACCGTCGAGTCGATGTGCACGGGCGGTTTCGTCCTGGACGTCGACTTCTCGGCGACCCGCCTGCGC
GAGCTGTGCAAACTCGACGGCGGCATCGTTGTCGACAAGGACATCACCAAGATCCTTCGGGCGGGCGTGCAGCTGGTGCC
CGACCCGACCATCCCCACCGAGGAGACGGGCACCCGGCACCGCACCGCGGACCGCGTCTCCAAGCAGGTCGGCTTCCCCG
TCGTCTCGGTCTCTCAGTCGATGCGCCTGATCGCGCTGTACGTCGACGGTCAGCGCCGCGTCCTGGAGGACTCCGCCGCG
ATCCTCTCCCGCGCCAACCAGGCCCTCGCGACCCTGGAGCGCTACAAGCTCCGCCTCGACGAGGTCGCGGGCACGCTGTC
CGCCCTGGAGATCGAGGACCTGGTCACCGTCCGGGACGTGTCGGCGGTCGCCCAGCGCCTCGAAATGGTGCGCCGGATCG
CCACCGAGATCGCCGAGTACGTGGTCGAGCTGGGCACCGACGGACGGCTTCTCGCCCTCCAGCTGGACGAGTTGATCGCC
GGGGTGGAGCCCGAGCGTGAACTCGTCGTACGGGACTATGTGCCCGAGCCGACCGCGAAGCGCTCCCGCACGGTCGACGA
GGCCCTCTTCGAGCTGGACGCGCTGACCCACGCGGAGCTCCTCGAACTCTCCACCGTGGCCCGCGCGTTGGGCTACACCG
GCTCCCCCGAGGCGCTCGACTCCGCGGTCTCGCCGCGCGGTTTCCGCCTCCTCGCCAAGGTGCCGAGGCTTCCCGGCGCG
ATCATCGACCGTCTCGTCGAGCACTTCGGCGGCCTGCAGAAGCTGCTCGCCGCCAGCGTGGACGACCTGCAGACCGTCGA
CGGGGTCGGGGAGGCGCGGGCACGGAGCGTGCGCGAGGGGTTGTCGCGGTTGGCGGAGTCCTCGATTCTCGAGCGTTACG
TGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  disA Bacillus subtilis subsp. subtilis str. 168

45.429

96.524

0.438