Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   AB5J56_RS20125 Genome accession   NZ_CP163435
Coordinates   4508476..4509885 (+) Length   469 a.a.
NCBI ID   WP_369234115.1    Uniprot ID   -
Organism   Streptomyces sp. R21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4503476..4514885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J56_RS20110 (AB5J56_20105) - 4504004..4504849 (+) 846 WP_369234112.1 PaaX family transcriptional regulator C-terminal domain-containing protein -
  AB5J56_RS20115 (AB5J56_20110) - 4505240..4506634 (+) 1395 WP_369234113.1 alpha/beta hydrolase -
  AB5J56_RS20120 (AB5J56_20115) - 4506794..4508380 (+) 1587 WP_369234114.1 MFS transporter -
  AB5J56_RS20125 (AB5J56_20120) radA/sms 4508476..4509885 (+) 1410 WP_369234115.1 DNA repair protein RadA Machinery gene
  AB5J56_RS20130 (AB5J56_20125) disA 4509954..4511078 (+) 1125 WP_369234116.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  AB5J56_RS20135 (AB5J56_20130) - 4511334..4512149 (-) 816 WP_369234117.1 hypothetical protein -
  AB5J56_RS20140 (AB5J56_20135) - 4512406..4513326 (+) 921 WP_369234118.1 A/G-specific adenine glycosylase -
  AB5J56_RS20145 (AB5J56_20140) - 4513611..4514162 (+) 552 WP_369234119.1 SigE family RNA polymerase sigma factor -
  AB5J56_RS20150 (AB5J56_20145) - 4514150..4514800 (+) 651 WP_369234120.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49772.94 Da        Isoelectric Point: 7.7220

>NTDB_id=925175 AB5J56_RS20125 WP_369234115.1 4508476..4509885(+) (radA/sms) [Streptomyces sp. R21]
MAARTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSAVPIGEVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKDRGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITSLGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKIPPGMKVLEVADMGDALRVLPRSRRREAPREDEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=925175 AB5J56_RS20125 WP_369234115.1 4508476..4509885(+) (radA/sms) [Streptomyces sp. R21]
ATGGCTGCCCGTACGAAAACCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACGACACCGGGCC
GTGTCACCACCTCCGCGGTGCCCATCGGCGAGGTCGACGGCCGCCAGGCCACCGCACGCTCGACCGGCGTGCCCGAGCTG
GACCGCGTCCTCGGCGGTGGTCTCGTACCCGGCGCGGTCGTCCTCCTCGCGGGCGAGCCCGGCGTCGGCAAGTCGACGCT
CCTGCTCGACGTGGCGGCCAAGGCGGCGAGCGACGAGCACCGCACGTTGTATGTCACGGGTGAGGAGTCGGCGAGCCAGG
TACGGCTGCGCGCCGACCGCATCAAGGCGATCGACGACCACCTGTATCTGGCCGCCGAGACCGATCTGGCCGCCGTCCTC
GGTCACTTGGACGCGGTGAAGCCCTCGCTGCTCATCCTCGACTCCGTACAGACCGTGGCCTCCCCGGAGATCGACGGCGC
GCCCGGGGGCATGGCCCAGGTCCGGGAGGTAGCCGGGGCCCTCATCCGCGCCTCCAAGGACCGGGGCATGTCGACGCTCC
TGGTCGGCCATGTCACCAAGGACGGCGCGATCGCGGGACCGCGGCTGCTGGAACACCTGGTGGACGTCGTCCTGTCCTTC
GAGGGCGACCGTCACGCACGCCTGCGCCTCGTACGAGGGGTCAAGAACCGCTACGGCACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGGATCACGGGCCTCGCCGACCCGAGCGGCCTGTTCCTGACCCGCCGCGCCGAGCCGGTCCCGG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCCCTGGTCGCCGAGGTCCAGGCGCTCACGGTCGACTCGCAGATC
CCCTCCCCCCGTCGTACGACGTCCGGTCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTTCTGGAGCAGCGCGGCCG
GATCACCTCGCTCGGAAAGCGGGACATCTACTCGGCGACGGTCGGCGGTGTGAAGCTCTCCGAGCCCGCCGCGGACCTCG
CGATCGCCCTCGCGCTCGCGTCCGCGGCGAGCGACACCCCGCTGCCCAAGAACCTTGTCGCGATCGGCGAAGTCGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGGGTCCAGCGGCGACTGGCCGAAGCCCACCGTCTGGGCTTCACACACGCCCTCGT
ACCGACCGACCCGGGCAAGATCCCTCCCGGTATGAAGGTCCTGGAAGTCGCCGACATGGGCGACGCGCTGCGGGTCCTTC
CGCGCTCCCGTCGTCGAGAGGCCCCACGGGAGGACGAAGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.588

0.418
  radA Streptococcus mitis NCTC 12261

43.333

95.949

0.416
  radA Streptococcus mitis SK321

43.333

95.949

0.416
  radA Streptococcus pneumoniae TIGR4

42.889

95.949

0.412
  radA Streptococcus pneumoniae D39

42.889

95.949

0.412
  radA Streptococcus pneumoniae Rx1

42.889

95.949

0.412
  radA Streptococcus pneumoniae R6

42.889

95.949

0.412