Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB5J55_RS24185 Genome accession   NZ_CP163432
Coordinates   5211607..5213016 (-) Length   469 a.a.
NCBI ID   WP_369272667.1    Uniprot ID   -
Organism   Streptomyces sp. R11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5206607..5218016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J55_RS24150 (AB5J55_24150) - 5206666..5207199 (+) 534 WP_369272662.1 hypothetical protein -
  AB5J55_RS24155 (AB5J55_24155) - 5207222..5207332 (+) 111 Protein_4755 histidine kinase -
  AB5J55_RS24160 (AB5J55_24160) - 5207571..5208038 (+) 468 WP_369272663.1 histidine kinase -
  AB5J55_RS24165 (AB5J55_24165) - 5208035..5208694 (+) 660 WP_369272664.1 response regulator -
  AB5J55_RS24170 (AB5J55_24170) - 5208698..5209330 (-) 633 WP_369272665.1 phosphatase PAP2 family protein -
  AB5J55_RS24175 (AB5J55_24175) - 5209517..5210350 (+) 834 WP_369272666.1 hypothetical protein -
  AB5J55_RS24180 (AB5J55_24180) disA 5210402..5211526 (-) 1125 WP_328425026.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  AB5J55_RS24185 (AB5J55_24185) radA 5211607..5213016 (-) 1410 WP_369272667.1 DNA repair protein RadA Machinery gene
  AB5J55_RS24190 (AB5J55_24190) - 5213226..5215010 (+) 1785 WP_369272668.1 hypothetical protein -
  AB5J55_RS24195 (AB5J55_24195) - 5215034..5215903 (-) 870 WP_369272669.1 hypothetical protein -
  AB5J55_RS24200 (AB5J55_24200) - 5215978..5216910 (+) 933 WP_369272670.1 Ppx/GppA family phosphatase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49556.65 Da        Isoelectric Point: 7.7222

>NTDB_id=925030 AB5J55_RS24185 WP_369272667.1 5211607..5213016(-) (radA) [Streptomyces sp. R11]
MAARTKSTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSALPIGQVDGRQATARPTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIGAIDDHLYLAAETDLAAVL
GHLDAVKPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKIPAGMKVLEVADIGDALQVLPRSRRREAPRDAEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=925030 AB5J55_RS24185 WP_369272667.1 5211607..5213016(-) (radA) [Streptomyces sp. R11]
ATGGCTGCCCGTACCAAGTCCACGAAGGACCGCCCGTCCTACCGCTGCACGGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACGACGCCGGGGC
GGGTGACGACATCCGCGCTGCCGATCGGGCAGGTCGACGGACGGCAGGCCACCGCGCGGCCCACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGGCTGGTGCCCGGCGCCGTCGTCCTCGTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACGCT
GCTGCTGGACGTGGCGGCCAAGTCGGCGAGCGACGAGCACCGCACGCTCTATGTCACCGGCGAGGAGTCGGCGAGCCAGG
TGCGGCTGCGTGCCGACCGCATCGGCGCCATCGACGACCACCTGTATCTCGCGGCCGAGACCGATCTGGCCGCCGTGCTG
GGCCACTTGGACGCGGTGAAGCCGTCGCTGCTCATCATGGACTCGGTACAGACCGTGGCCTCGCCGGAGATCGACGGCGC
ACCGGGCGGCATGGCCCAGGTCCGCGAGGTGGCCGGCGCCCTGATCCGGGCGTCCAAGGAGCGCGGGATGTCCACACTCC
TTGTGGGGCACGTCACCAAGGACGGGGCCATCGCCGGACCCCGCCTCCTCGAACACCTCGTGGACGTGGTGCTCAGCTTC
GAGGGCGACCGGCACGCGCGCCTGCGTCTCGTACGAGGCGTCAAGAACCGCTACGGCACGACGGACGAGGTCGGCTGCTT
CGAACTGCACGATGAGGGCATTACGGGCCTTGCCGACCCAAGCGGACTTTTCCTGACCCGTCGCGCCGAACCGGTCCCCG
GTACCTGTCTGACGGTCACCCTGGAGGGCCGCCGCCCGCTGGTGGCCGAAGTCCAGGCGCTCACCGTCGACTCACAGATC
CCCTCGCCCCGCCGTACGACGTCCGGCCTGGAGACGTCCCGTGTCTCGATGATGCTGGCCGTCCTCGAACAGCGCGGCCG
GATCAGCGCCCTCGGCAAGCGGGACATCTACTCCGCGACGGTGGGCGGAGTGAAGCTCTCGGAGCCCGCCGCCGACCTCG
CCGTGGCCCTCGCTCTGGCCTCCGCCGCGAGTGACACACCTCTCCCCAAGAACCTCGTCGCGATCGGCGAGGTGGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTGCAGCGCAGACTCGCCGAAGCACACCGGCTGGGCTTCACGCACGCCCTCGT
ACCGGGCGACCCGGGCAAGATCCCTGCGGGCATGAAGGTGCTGGAAGTGGCCGACATAGGGGACGCGCTGCAAGTCCTTC
CGCGCTCGCGTCGCAGAGAGGCCCCACGGGACGCCGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae TIGR4

43.207

95.736

0.414
  radA Streptococcus pneumoniae D39

43.207

95.736

0.414
  radA Streptococcus pneumoniae R6

43.207

95.736

0.414
  radA Streptococcus pneumoniae Rx1

43.207

95.736

0.414
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.92

96.375

0.414
  radA Streptococcus mitis SK321

44.471

90.618

0.403
  radA Streptococcus mitis NCTC 12261

44.471

90.618

0.403