Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   VKP55_RS00580 Genome accession   NZ_CP142351
Coordinates   94072..94170 (+) Length   32 a.a.
NCBI ID   WP_020833188.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain SS1366     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 89072..99170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP55_RS00560 (VKP55_00560) purK 89132..90205 (+) 1074 WP_032461293.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  VKP55_RS00565 (VKP55_00565) - 90207..91625 (+) 1419 WP_109821005.1 hypothetical protein -
  VKP55_RS00570 (VKP55_00570) purB 91645..92937 (+) 1293 WP_002986683.1 adenylosuccinate lyase -
  VKP55_RS00575 (VKP55_00575) comR 93070..93981 (+) 912 WP_326674266.1 helix-turn-helix domain-containing protein Regulator
  VKP55_RS00580 (VKP55_00580) comS 94072..94170 (+) 99 WP_020833188.1 quorum-sensing system DWW-type pheromone Regulator
  VKP55_RS00585 (VKP55_00585) ruvB 94201..95199 (+) 999 WP_063629365.1 Holliday junction branch migration DNA helicase RuvB -
  VKP55_RS00590 (VKP55_00590) - 95337..95774 (+) 438 WP_002994668.1 low molecular weight protein-tyrosine-phosphatase -
  VKP55_RS00595 (VKP55_00595) - 95797..96198 (+) 402 WP_002986671.1 MORN repeat-containing protein -
  VKP55_RS00600 (VKP55_00600) - 96195..97970 (+) 1776 WP_002987732.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3758.63 Da        Isoelectric Point: 10.7919

>NTDB_id=925023 VKP55_RS00580 WP_020833188.1 94072..94170(+) (comS) [Streptococcus pyogenes strain SS1366]
MLKKVKPFLLLAAVVAFKVARVMHEFDWWNLG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=925023 VKP55_RS00580 WP_020833188.1 94072..94170(+) (comS) [Streptococcus pyogenes strain SS1366]
ATGTTAAAAAAAGTTAAGCCATTTTTACTATTAGCCGCAGTAGTTGCATTTAAAGTTGCTCGTGTAATGCATGAATTTGA
TTGGTGGAATCTTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS315

100

100

1
  comS Streptococcus pyogenes MGAS8232

45.161

96.875

0.437