Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AB5J55_RS00650 Genome accession   NZ_CP163432
Coordinates   109081..109755 (-) Length   224 a.a.
NCBI ID   WP_369268734.1    Uniprot ID   -
Organism   Streptomyces sp. R11     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 104081..114755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J55_RS00625 (AB5J55_00625) - 105811..106254 (-) 444 WP_369268729.1 SRPBCC domain-containing protein -
  AB5J55_RS00630 (AB5J55_00630) - 106257..106607 (-) 351 WP_369268730.1 ArsR/SmtB family transcription factor -
  AB5J55_RS00635 (AB5J55_00635) - 106604..107062 (-) 459 WP_369268731.1 SRPBCC family protein -
  AB5J55_RS00640 (AB5J55_00640) - 107337..108383 (+) 1047 WP_369268732.1 M4 family metallopeptidase -
  AB5J55_RS00645 (AB5J55_00645) - 108456..108611 (+) 156 WP_369268733.1 hypothetical protein -
  AB5J55_RS00650 (AB5J55_00650) vraR 109081..109755 (-) 675 WP_369268734.1 response regulator Regulator
  AB5J55_RS00655 (AB5J55_00655) - 109752..110960 (-) 1209 WP_369268735.1 sensor histidine kinase -
  AB5J55_RS00660 (AB5J55_00660) - 111315..113507 (+) 2193 WP_369268736.1 MMPL family transporter -
  AB5J55_RS00665 (AB5J55_00665) - 113753..114595 (-) 843 WP_369268737.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24594.25 Da        Isoelectric Point: 6.0901

>NTDB_id=924983 AB5J55_RS00650 WP_369268734.1 109081..109755(-) (vraR) [Streptomyces sp. R11]
MTIRVVVADDQALVRRGFTMILRVHHDIEVVAEAGTGLEAIEAAHRHHPDVILMDIRMPEMDGLEATSRILEEADWGARV
LILTTFDPDEYVYKALRSGASAFVLKDIPPEQLATAVRTVAEGGTLLAPSITRRFIDRFAQRRVNTVAAARLERLTGRER
EIMTAVARGASNAEIAEQLVIGAATVKSHVSSILTKLGLRDRIQIVIFAYESGLIEAGDHEVGH

Nucleotide


Download         Length: 675 bp        

>NTDB_id=924983 AB5J55_RS00650 WP_369268734.1 109081..109755(-) (vraR) [Streptomyces sp. R11]
GTGACGATCCGCGTCGTCGTCGCCGACGATCAGGCGCTGGTACGCCGGGGCTTCACCATGATTCTCCGGGTCCACCACGA
CATCGAGGTCGTGGCCGAGGCGGGCACGGGTCTCGAAGCGATCGAGGCGGCCCACCGGCATCACCCGGATGTGATCCTCA
TGGACATCCGCATGCCTGAAATGGACGGCCTCGAAGCGACCTCGCGGATCCTGGAGGAGGCCGATTGGGGAGCGCGGGTA
CTGATCCTGACGACCTTCGACCCGGACGAGTACGTCTACAAGGCGTTGCGCTCCGGCGCCAGCGCCTTCGTACTCAAGGA
CATTCCCCCCGAACAGTTGGCCACCGCCGTACGCACCGTGGCCGAGGGCGGGACGCTGCTGGCCCCCTCGATCACCCGGC
GCTTCATCGACCGGTTCGCGCAGCGCCGCGTCAACACCGTCGCCGCGGCCCGCCTGGAACGCCTCACCGGCCGCGAACGC
GAGATCATGACCGCCGTGGCCCGGGGCGCGAGCAACGCGGAGATCGCCGAGCAACTCGTCATCGGAGCCGCCACGGTCAA
ATCACACGTGTCGAGCATCCTCACCAAACTCGGCCTGCGCGACCGGATCCAGATCGTGATCTTCGCCTACGAAAGCGGCC
TCATCGAAGCGGGCGACCACGAAGTCGGCCACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.13

96.429

0.406
  degU Bacillus subtilis subsp. subtilis str. 168

38.222

100

0.384