Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   VKP56_RS01365 Genome accession   NZ_CP142350
Coordinates   256040..256966 (+) Length   308 a.a.
NCBI ID   WP_136047229.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain SS1445     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 251040..261966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP56_RS01355 (VKP56_01355) amiA 252503..254473 (+) 1971 WP_014407301.1 peptide ABC transporter substrate-binding protein Regulator
  VKP56_RS01360 (VKP56_01360) amiC 254538..256040 (+) 1503 WP_014407302.1 ABC transporter permease Regulator
  VKP56_RS01365 (VKP56_01365) amiD 256040..256966 (+) 927 WP_136047229.1 oligopeptide ABC transporter permease OppC Regulator
  VKP56_RS01370 (VKP56_01370) amiE 256975..258045 (+) 1071 WP_010921893.1 ABC transporter ATP-binding protein Regulator
  VKP56_RS01375 (VKP56_01375) amiF 258038..258961 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  VKP56_RS09005 - 258999..259082 (-) 84 Protein_224 IS3 family transposase -
  VKP56_RS09010 - 259216..259535 (-) 320 Protein_225 IS3 family transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34876.83 Da        Isoelectric Point: 8.5670

>NTDB_id=924983 VKP56_RS01365 WP_136047229.1 256040..256966(+) (amiD) [Streptococcus pyogenes strain SS1445]
MESIDKSKFRFVERDSEASEVIDTPAYSYWKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINITIGVVLGAIWGVSKAFDKVMIEIYNIISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYIS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=924983 VKP56_RS01365 WP_136047229.1 256040..256966(+) (amiD) [Streptococcus pyogenes strain SS1445]
ATGGAATCGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTGAAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTACTGGAAATCAGTGTTTCGTCAGTTTTTTTCTAAAAAATCTACAGTCTTTATGCTCGTGATTTTAGTGACAGTCT
TGATGATGAGCTTTATTTATCCAATGTTTGCCAACTACGACTTTAATGACGTTAGTAATATCAATGACTTTTCAAAGCGT
TATATTTGGCCGAATGCAGAGTACTGGTTTGGAACCGACAAAAATGGGCAATCTCTGTTTGATGGTGTTTGGTATGGGGC
ACGTAATTCTATTTTAATCTCAGTTATAGCGACACTAATTAATATCACCATTGGGGTAGTGTTAGGAGCCATATGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAAATTTATAACATTATCTCAAATATCCCTTCTATGCTTATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGATTTTGGAATTTGATTCTAGCTTTCTGTATCACTGGATGGATTGGTGTCGCCTACTC
CATCCGTGTTCAAATCTTGCGTTACCGTGATTTAGAATACAACCTTGCTAGTCAAACTTTGGGAACACCAATGTACAAGA
TTGCTGTTAAGAACCTCCTGCCTCAATTGGTTTCAGTTATCATGACTATGTTGTCACAAATGCTACCAGTTTATATATCT
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACCACTCCAAGTTTAGGACGTTTGATTGCTAATTATTC
AAGCAACTTAACAACAAATGCCTACCTCTTTTGGATTCCCTTAGTAACATTGATTTTAGTATCGTTACCACTATACATTG
TCGGACAAAACTTGGCTGATGCCAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

74.026

100

0.74
  amiD Streptococcus thermophilus LMG 18311

73.377

100

0.734
  amiD Streptococcus thermophilus LMD-9

73.377

100

0.734