Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   VKP56_RS00335 Genome accession   NZ_CP142350
Coordinates   54366..54464 (+) Length   32 a.a.
NCBI ID   WP_020833188.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain SS1445     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 49366..59464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP56_RS00320 (VKP56_00320) - 50287..51768 (+) 1482 WP_009880316.1 PIN-like domain-containing protein -
  VKP56_RS00325 (VKP56_00325) purB 51941..53233 (+) 1293 WP_115353931.1 adenylosuccinate lyase -
  VKP56_RS00330 (VKP56_00330) comR 53364..54275 (+) 912 WP_011888526.1 helix-turn-helix domain-containing protein Regulator
  VKP56_RS00335 (VKP56_00335) comS 54366..54464 (+) 99 WP_020833188.1 quorum-sensing system DWW-type pheromone Regulator
  VKP56_RS00340 (VKP56_00340) ruvB 54495..55493 (+) 999 WP_011054100.1 Holliday junction branch migration DNA helicase RuvB -
  VKP56_RS00345 (VKP56_00345) - 55631..56068 (+) 438 WP_002994668.1 low molecular weight protein-tyrosine-phosphatase -
  VKP56_RS00350 (VKP56_00350) - 56091..56492 (+) 402 WP_002986671.1 MORN repeat-containing protein -
  VKP56_RS00355 (VKP56_00355) - 56489..58264 (+) 1776 WP_115353932.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3758.63 Da        Isoelectric Point: 10.7919

>NTDB_id=924969 VKP56_RS00335 WP_020833188.1 54366..54464(+) (comS) [Streptococcus pyogenes strain SS1445]
MLKKVKPFLLLAAVVAFKVARVMHEFDWWNLG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=924969 VKP56_RS00335 WP_020833188.1 54366..54464(+) (comS) [Streptococcus pyogenes strain SS1445]
ATGTTAAAAAAAGTTAAGCCATTTTTACTATTAGCCGCAGTAGTTGCATTTAAAGTTGCTCGTGTAATGCATGAATTTGA
TTGGTGGAATCTTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS315

100

100

1
  comS Streptococcus pyogenes MGAS8232

45.161

96.875

0.437