Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   VKP35_RS09425 Genome accession   NZ_CP142349
Coordinates   54332..54427 (+) Length   31 a.a.
NCBI ID   WP_198462994.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 11RS100     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 49332..59427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP35_RS00320 (VKP35_00320) - 50202..51542 (+) 1341 WP_002987721.1 hypothetical protein -
  VKP35_RS00325 (VKP35_00325) purB 51911..53203 (+) 1293 WP_111713105.1 adenylosuccinate lyase -
  VKP35_RS00330 (VKP35_00330) comR 53337..54248 (+) 912 WP_002986681.1 transcriptional regulator Rgg4/ComR Regulator
  VKP35_RS09425 comS 54332..54427 (+) 96 WP_198462994.1 quorum-sensing system DWW-type pheromone Regulator
  VKP35_RS00335 (VKP35_00335) ruvB 54474..55472 (+) 999 WP_002986679.1 Holliday junction branch migration DNA helicase RuvB -
  VKP35_RS00340 (VKP35_00340) - 55610..56047 (+) 438 WP_002986675.1 low molecular weight protein-tyrosine-phosphatase -
  VKP35_RS00345 (VKP35_00345) - 56070..56471 (+) 402 WP_002986671.1 MORN repeat-containing protein -
  VKP35_RS00350 (VKP35_00350) - 56468..58243 (+) 1776 WP_136119346.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 31 a.a.        Molecular weight: 3857.66 Da        Isoelectric Point: 10.0436

>NTDB_id=924967 VKP35_RS09425 WP_198462994.1 54332..54427(+) (comS) [Streptococcus pyogenes strain 11RS100]
MLKKYKYYFIFAALLSFKVVQELSAVDWWRL

Nucleotide


Download         Length: 96 bp        

>NTDB_id=924967 VKP35_RS09425 WP_198462994.1 54332..54427(+) (comS) [Streptococcus pyogenes strain 11RS100]
ATGTTAAAAAAGTATAAGTACTATTTTATATTCGCAGCTCTACTATCTTTTAAAGTAGTTCAAGAGCTTAGTGCTGTTGA
CTGGTGGCGATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

100

100

1
  comS Streptococcus pyogenes MGAS315

45.161

100

0.452