Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   VKP35_RS01510 Genome accession   NZ_CP142349
Coordinates   277844..278914 (+) Length   356 a.a.
NCBI ID   WP_326623041.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 11RS100     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 272844..283914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP35_RS01495 (VKP35_01495) amiA 273372..275342 (+) 1971 WP_030126502.1 peptide ABC transporter substrate-binding protein Regulator
  VKP35_RS01500 (VKP35_01500) amiC 275407..276909 (+) 1503 WP_002991105.1 ABC transporter permease Regulator
  VKP35_RS01505 (VKP35_01505) amiD 276909..277835 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  VKP35_RS01510 (VKP35_01510) amiE 277844..278914 (+) 1071 WP_326623041.1 ABC transporter ATP-binding protein Regulator
  VKP35_RS01515 (VKP35_01515) amiF 278907..279830 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  VKP35_RS09430 - 279868..279957 (-) 90 WP_110002794.1 IS3 family transposase -
  VKP35_RS01520 (VKP35_01520) - 279978..280223 (-) 246 WP_002985998.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39765.89 Da        Isoelectric Point: 5.7015

>NTDB_id=924929 VKP35_RS01510 WP_326623041.1 277844..278914(+) (amiE) [Streptococcus pyogenes strain 11RS100]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TDLKTNKEWAKIRGSKIATIFQDPMTSLSLIKTIGRQITEVIIKHQKVSNAKAKEMALDYMNKVGIPNAKKRFEDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIVELLKSLQREYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLADESGELYAIPGTPPSLYSPIIGDAFALRSEYAMVLDFEKAPPAINVSETHWAK
TWLLHPEAPKVQKPEVIQDLHQKILRKMSQQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=924929 VKP35_RS01510 WP_326623041.1 277844..278914(+) (amiE) [Streptococcus pyogenes strain 11RS100]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTAGAATTTGATGTGCGTGATCGTGTTTTAACAGC
TATCCGTAACGTCTCACTGGAACTTGTTGAAGGAGAAGTCCTTGCTTTTGTAGGGGAATCAGGCTCAGGTAAATCTGTTT
TAACAAAGACCTTTACAGGGATGTTGGAGTCTAATGGACGCATTGCTAATGGTTCAATTGTCTATCGTGGGCAAGAATTG
ACAGATTTAAAAACAAATAAAGAGTGGGCAAAGATTCGCGGCTCAAAAATCGCAACGATTTTCCAAGACCCAATGACCAG
TCTTAGTCTCATTAAAACTATCGGTAGACAAATCACAGAAGTGATTATTAAGCACCAAAAAGTAAGTAATGCCAAAGCTA
AAGAAATGGCCCTTGATTACATGAATAAAGTGGGTATCCCAAATGCCAAGAAACGCTTTGAAGATTACCCATTTGAGTAT
TCAGGAGGAATGCGTCAACGTATTGTTATCGCTATTGCTTTAGCTTGTCGCCCAGATATTCTTATCTGTGATGAGCCAAC
AACAGCCCTTGATGTGACTATTCAAGCTCAAATCGTTGAGTTATTGAAGTCGCTTCAACGAGAATATCATTTCACCATTA
TCTTTATTACGCACGATTTAGGTGTTGTGGCAAGCATTGCAGATAAAGTGGCTGTCATGTATGCAGGAGAAATTGTTGAA
TTTGGAACAGTCGAAGAGATTTTCTATGATCCAAGACACCCCTATACATGGAGTTTGCTGTCTAGCTTACCGCAGTTGGC
AGATGAATCTGGTGAACTTTACGCTATTCCAGGAACGCCTCCATCACTTTATTCACCAATTATCGGAGATGCCTTTGCAC
TTCGCTCAGAATATGCTATGGTTTTAGACTTTGAAAAAGCACCTCCGGCGATTAACGTATCTGAGACTCATTGGGCCAAA
ACATGGCTTTTACACCCAGAGGCTCCAAAAGTTCAAAAACCAGAAGTCATTCAAGATTTGCATCAAAAAATCTTAAGGAA
AATGTCACAACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

76.111

100

0.77
  amiE Streptococcus thermophilus LMG 18311

75

100

0.758
  amiE Streptococcus thermophilus LMD-9

75

100

0.758
  oppD Streptococcus mutans UA159

56.38

94.663

0.534