Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   AB5J58_RS00625 Genome accession   NZ_CP163431
Coordinates   127318..128727 (-) Length   469 a.a.
NCBI ID   WP_266769766.1    Uniprot ID   -
Organism   Streptomyces sp. R08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 122318..133727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J58_RS00605 (AB5J58_00605) - 122934..123473 (-) 540 WP_019064956.1 SigE family RNA polymerase sigma factor -
  AB5J58_RS00610 (AB5J58_00610) - 123774..124727 (-) 954 WP_369186146.1 A/G-specific adenine glycosylase -
  AB5J58_RS00615 (AB5J58_00615) - 125223..126044 (+) 822 WP_369186147.1 hypothetical protein -
  AB5J58_RS00620 (AB5J58_00620) disA 126122..127180 (-) 1059 WP_266776516.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  AB5J58_RS00625 (AB5J58_00625) radA/sms 127318..128727 (-) 1410 WP_266769766.1 DNA repair protein RadA Machinery gene
  AB5J58_RS00630 (AB5J58_00630) - 128926..130617 (+) 1692 WP_369186148.1 hypothetical protein -
  AB5J58_RS00635 (AB5J58_00635) - 130621..131478 (-) 858 WP_328830758.1 hypothetical protein -
  AB5J58_RS00640 (AB5J58_00640) - 131562..132494 (+) 933 WP_369186149.1 Ppx/GppA family phosphatase -
  AB5J58_RS00645 (AB5J58_00645) - 132897..133721 (+) 825 WP_266769759.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49694.80 Da        Isoelectric Point: 8.0018

>NTDB_id=924894 AB5J58_RS00625 WP_266769766.1 127318..128727(-) (radA/sms) [Streptomyces sp. R08]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCSECQAWGTVEEYGAPAVRTTAPGRVTTSAVPIGQVDGRTATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASEEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLATIL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGKIPAGMKVIEVADIGDALRVLPRSRKREAPRDDEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=924894 AB5J58_RS00625 WP_266769766.1 127318..128727(-) (radA/sms) [Streptomyces sp. R08]
ATGGCTGCCCGTACGAAGACCACCAAGGACCGACCGTCCTATCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCTCCGAGTGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACCGCCCCCGGCC
GCGTCACCACCTCCGCGGTCCCGATCGGCCAGGTCGACGGCCGTACGGCCACCGCCCGTTCGACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGCCTGGTCCCCGGAGCGGTCGTCCTCGTCGCGGGCGAACCGGGCGTGGGCAAGTCGACCCT
CCTCCTGGACGTGGCGGCGAAGTCGGCGAGCGAGGAGCACCGCACGCTCTATGTCACCGGCGAGGAGTCGGCGAGCCAGG
TCCGGCTGCGCGCCGACCGCATCAAGGCGATCGACGACCACCTGTATCTCGCCGCCGAGACCGATCTAGCCACGATCCTG
GGCCACTTGGACGCGGTGAAACCCTCCCTCCTCATCCTGGACTCCGTGCAGACGGTGGCCTCCCCGGAGATCGACGGCGC
CCCCGGAGGCATGGCCCAGGTCCGCGAGGTGGCCGGCGCCCTGATCCGCGCCTCCAAGGAGCGCGGCATGTCCACCCTCC
TGGTGGGCCACGTCACCAAGGACGGCGCGATCGCGGGACCCCGCCTCCTGGAGCACCTGGTGGACGTGGTGCTCTCCTTC
GAGGGCGACCGCCACGCCCGCCTGCGTCTCGTACGGGGCGTCAAGAACCGCTACGGCACGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTGGCCGACCCCAGCGGCCTGTTCCTGACCCGCCGCGCGGAGCCGGTCCCCG
GCACCTGTCTGACGGTCACCCTGGAGGGCCGCCGCCCCCTGGTCGCCGAGGTCCAGGCGCTCACGGTCGACTCCCAGATC
CCCTCCCCCAGGCGCACCACCTCGGGCCTGGAGACGTCCCGCGTCTCGATGATGCTCGCGGTCCTGGAGCAGCGCGGCAG
GATCAGCGCCCTGGGCAAGCGGGACATCTACTCCGCGACGGTCGGCGGGGTGAAGCTCTCCGAGCCGGCCGCGGATCTGG
CCATCGCGCTCGCCCTGGCCTCCGCGGCGAGCGACACCCCCCTCCCCAAGAACCTGGTGGCGATCGGCGAAGTGGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCAGGCTCTCCGAAGCACACCGTCTGGGCTTCACCCACGCCCTCGT
CCCGAGCGACCCGGGCAAGATCCCGGCGGGCATGAAGGTCATCGAAGTGGCCGACATAGGAGACGCTCTCCGGGTCCTCC
CGCGCTCCCGTAAACGAGAGGCCCCACGGGACGACGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.584

96.375

0.42
  radA Streptococcus mitis SK321

42.699

96.375

0.412
  radA Streptococcus mitis NCTC 12261

42.699

96.375

0.412
  radA Streptococcus pneumoniae Rx1

42.762

95.736

0.409
  radA Streptococcus pneumoniae TIGR4

42.762

95.736

0.409
  radA Streptococcus pneumoniae D39

42.762

95.736

0.409
  radA Streptococcus pneumoniae R6

42.762

95.736

0.409