Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JE76HU_RS15605 Genome accession   NZ_AP028094
Coordinates   3092220..3092957 (+) Length   245 a.a.
NCBI ID   WP_137549697.1    Uniprot ID   -
Organism   Escherichia coli strain JNE132847     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3087220..3097957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JE76HU_RS15590 (O76HUS_29720) clpC 3087674..3090247 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  JE76HU_RS15595 (O76HUS_29730) yfiH 3090377..3091108 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  JE76HU_RS15600 (O76HUS_29740) rluD 3091105..3092085 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JE76HU_RS15605 (O76HUS_29750) comL 3092220..3092957 (+) 738 WP_137549697.1 outer membrane protein assembly factor BamD Machinery gene
  JE76HU_RS15610 (O76HUS_29760) raiA 3093228..3093569 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  JE76HU_RS15615 pheL 3093673..3093720 (+) 48 WP_001700969.1 pheA operon leader peptide PheL -
  JE76HU_RS15620 (O76HUS_29770) pheA 3093819..3094979 (+) 1161 WP_000200100.1 bifunctional chorismate mutase/prephenate dehydratase -
  JE76HU_RS15625 (O76HUS_29780) tyrA 3095022..3096143 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  JE76HU_RS15630 (O76HUS_29790) aroF 3096154..3097224 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  JE76HU_RS15635 (O76HUS_29800) yfiL 3097434..3097799 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27857.41 Da        Isoelectric Point: 6.4875

>NTDB_id=92469 JE76HU_RS15605 WP_137549697.1 3092220..3092957(+) (comL) [Escherichia coli strain JNE132847]
MTRMKYLVAAATLSLFLAGCSGSREEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=92469 JE76HU_RS15605 WP_137549697.1 3092220..3092957(+) (comL) [Escherichia coli strain JNE132847]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAGGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment