Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OCU50_RS11890 Genome accession   NZ_AP025514
Coordinates   2651610..2652590 (-) Length   326 a.a.
NCBI ID   WP_060468606.1    Uniprot ID   A0A109D7K9
Organism   Vibrio toranzoniae strain CECT 7225     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2646610..2657590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU50_RS11875 recA 2647114..2648154 (-) 1041 WP_060468604.1 recombinase RecA Machinery gene
  OCU50_RS11880 pncC 2648294..2648788 (-) 495 WP_060468640.1 nicotinamide-nucleotide amidase -
  OCU50_RS11885 mutS 2648913..2651474 (+) 2562 WP_060468605.1 DNA mismatch repair protein MutS -
  OCU50_RS11890 rpoS 2651610..2652590 (-) 981 WP_060468606.1 RNA polymerase sigma factor RpoS Regulator
  OCU50_RS11895 nlpD 2652689..2653603 (-) 915 WP_060468607.1 murein hydrolase activator NlpD -
  OCU50_RS11900 - 2653639..2654265 (-) 627 WP_017056581.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  OCU50_RS11905 surE 2654266..2655009 (-) 744 WP_060468608.1 5'/3'-nucleotidase SurE -
  OCU50_RS11910 truD 2655085..2656131 (-) 1047 WP_060468609.1 tRNA pseudouridine(13) synthase TruD -
  OCU50_RS11915 ispF 2656154..2656633 (-) 480 WP_060468610.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  OCU50_RS11920 ispD 2656636..2657337 (-) 702 WP_060468611.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 37143.40 Da        Isoelectric Point: 5.1445

>NTDB_id=92414 OCU50_RS11890 WP_060468606.1 2651610..2652590(-) (rpoS) [Vibrio toranzoniae strain CECT 7225]
MSISNAVTKEEFDLVQATTEPEALGKAKRTVTKKTEAKEEVEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLPLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide


Download         Length: 981 bp        

>NTDB_id=92414 OCU50_RS11890 WP_060468606.1 2651610..2652590(-) (rpoS) [Vibrio toranzoniae strain CECT 7225]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTGTCCAAGCAACCACGGAACCGGAAGCACTTGGAAAAGC
AAAGCGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGTTGAAGTTACGTCTAAAAGCTTAGATGCCACTCAACTTT
ATCTAGGCGAGATCGGTTTCTCACCACTATTAACCGCAGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCACGTAAACGCATGATAGAAAGTAACCTGCCTTTAGTGGTAAAGATTTCCCGTCGTTATAGCAATCGCGGTTT
AGCACTTCTCGATCTAATTGAAGAAGGCAACTTAGGTTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAACGTGGTTTCC
GTTTTTCGACCTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCGTTGATGAATCAGACTCGGACTATCCGTTTA
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACTGCAAGAGAGCTATCACAAAAGCTTGACCATGAACCAAC
GGCAGAAGAGATCGCTTCTAAGCTAGATAAACCCGTTGGTGATGTGAGCAAGATGCTTCGTCTAAACGAAAGAGTGAGTT
CTGTAGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCAGACATCAACAATTCAGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAATTCGTTGATCTTCTGGCTTGATGAGCTGAATCCGAAGCAGAAAGAGGTGCT
TGCACGTCGATTTGGATTGCTTGGTTATGAACCGTCAACACTAGAAGAAGTTGGTCGTGAAATTAGCCTGACTCGTGAGC
GTGTTCGTCAAATTCAAGTTGAAGGTCTGCGTCGTTTACGTGAGATTCTGATCAAACAAGGTCTGAACATGGAAAACCTG
TTCAACGTTGAAAATGACTAA

Domains

Predicted by InterproScan.

Sigma-70, region 4 (Sigma70_r4)

(255-308)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(49-82)

Sigma-70 region 2 (Sigma70_r2)

(87-156)

Sigma-70 region 3 (Sigma70_r3)

(167-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A109D7K9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

80.838

100

0.828

Multiple sequence alignment