Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   OCU50_RS11660 Genome accession   NZ_AP025514
Coordinates   2607253..2607858 (+) Length   201 a.a.
NCBI ID   WP_032547912.1    Uniprot ID   A0A120DGB0
Organism   Vibrio toranzoniae strain CECT 7225     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2602253..2612858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU50_RS11640 - 2602486..2603403 (-) 918 WP_060468577.1 ABC transporter ATP-binding protein -
  OCU50_RS11645 - 2603707..2605338 (-) 1632 WP_046223322.1 SulP family inorganic anion transporter -
  OCU50_RS11650 can 2605625..2606284 (+) 660 WP_046223321.1 carbonate dehydratase -
  OCU50_RS11655 hpt 2606389..2606919 (-) 531 WP_017056620.1 hypoxanthine phosphoribosyltransferase -
  OCU50_RS11660 opaR 2607253..2607858 (+) 606 WP_032547912.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OCU50_RS11665 lpdA 2608045..2609475 (-) 1431 WP_017056618.1 dihydrolipoyl dehydrogenase -
  OCU50_RS11670 aceF 2609718..2611601 (-) 1884 WP_060468578.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23333.58 Da        Isoelectric Point: 6.2928

>NTDB_id=92406 OCU50_RS11660 WP_032547912.1 2607253..2607858(+) (opaR) [Vibrio toranzoniae strain CECT 7225]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKKNLHNIATEMVNLVAQDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLLQNMFSKAIERGDVCDEHDPK
HLANLFHGICYSLFIQAKRLETPEEQENLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=92406 OCU50_RS11660 WP_032547912.1 2607253..2607858(+) (opaR) [Vibrio toranzoniae strain CECT 7225]
ATGGACTCAATATCTAAGAGGCCTAGAACTAGGCTTTCACCCTTAAAAAGAAAACTTCAATTGATGGAAATCGCACTTGA
GGTATTCTCTCGCCGCGGCATTGGCCGAGGTGGCCACGCAGATATCGCAGATATTGCTCAGGTGTCTGTAGCAACTGTAT
TTAACTACTTCCCTACCCGAGAAGATCTGGTTGATGAAGTACTGAATCATGTCGTACGCCAATTCTCTAACTTCCTTTCA
GATAATATCGATCTCGATATTCACGCGAAAAAAAATCTACATAATATTGCCACTGAAATGGTGAACTTAGTGGCTCAAGA
TAGCCATTGGCTGAATGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTATGGCCTTTATTTGTCACTACCAACC
GCACTAACCAAATGTTATTACAAAATATGTTTAGTAAGGCGATTGAGCGTGGAGATGTGTGTGATGAGCATGATCCTAAG
CATCTTGCGAACCTATTTCACGGCATCTGCTACTCGTTATTCATTCAAGCAAAACGTCTCGAAACGCCAGAAGAGCAAGA
AAACTTAACAGACAGCTACTTAAACATGTTGTGTATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A120DGB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

81

99.502

0.806
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726

Multiple sequence alignment