Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   AB0R08_RS02230 Genome accession   NZ_CP162609
Coordinates   471116..472528 (-) Length   470 a.a.
NCBI ID   WP_032781150.1    Uniprot ID   A0A5D4ILP0
Organism   Streptomyces sp. 1268     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 466116..477528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R08_RS02210 - 466872..467543 (-) 672 WP_408990910.1 SigE family RNA polymerase sigma factor -
  AB0R08_RS02215 - 467714..468628 (-) 915 WP_093807455.1 A/G-specific adenine glycosylase -
  AB0R08_RS02220 - 468934..469668 (+) 735 WP_408994680.1 hypothetical protein -
  AB0R08_RS02225 disA 469911..471035 (-) 1125 WP_006125491.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  AB0R08_RS02230 radA/sms 471116..472528 (-) 1413 WP_032781150.1 DNA repair protein RadA Machinery gene
  AB0R08_RS02235 - 472748..474712 (+) 1965 WP_408990911.1 BACON domain-containing protein -
  AB0R08_RS02240 - 474823..475686 (-) 864 WP_107412083.1 hypothetical protein -
  AB0R08_RS02245 - 475726..476676 (+) 951 WP_032781145.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49522.64 Da        Isoelectric Point: 8.0042

>NTDB_id=924031 AB0R08_RS02230 WP_032781150.1 471116..472528(-) (radA/sms) [Streptomyces sp. 1268]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRTATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAATDDHRTLYVTAEESASQVRLRADRIKAINDHLYLAAETDLSAV
LAHLDEVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDVAVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGRVPAGMKVTEVADMGDALRVLPRRSRQEAPQEDNARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=924031 AB0R08_RS02230 WP_032781150.1 471116..472528(-) (radA/sms) [Streptomyces sp. 1268]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAATGGCT
CGGCCGTTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTGCGCACGACGGCGGCGG
GCCGGGTCTCCACCGCCGCCCTGCCGATCGGCCAGGTCGACAGCCGGACGGCCACGGCCCGCTCCACCGGCGTCGGCGAG
CTGGACCGGGTGCTGGGCGGCGGGCTCGTGCCGGGCGCGGTCGTGCTGCTGGCGGGCGAGCCGGGCGTCGGCAAGTCGAC
GCTGCTGCTGGACGTGGCTGCCAAGGCGGCGACCGACGACCACCGCACGCTCTATGTGACCGCCGAGGAGTCCGCGAGCC
AGGTCCGGCTGCGGGCCGACCGGATCAAGGCGATCAACGACCACCTCTACCTCGCGGCGGAGACCGATCTGTCGGCGGTG
CTCGCGCATCTGGACGAGGTCAAGCCGTCGCTGCTGATCCTGGACTCGGTGCAGACGGTCGCCTCGCCCGAGATCGACGG
CGCGCCCGGCGGGATGGCCCAGGTCCGGGAGGTGGCCGGGGCGCTGATCCGGGCGTCCAAGGAGCGCGGGATGGCGACGC
TGCTGGTCGGCCATGTGACGAAGGACGGCGCGATCGCGGGGCCCCGGCTGCTGGAGCACTTGGTGGACGTGGTGCTGTCC
TTCGAGGGCGACCGGCACGCCCGGCTGCGGCTGGTGCGCGGCGTCAAGAACCGTTACGGCGCGACCGACGAGGTCGGCTG
CTTCGAACTGCACGACGAGGGCATCACCGGTCTCGCCGACCCGTCGGGCCTCTTCCTGACCCGCCGCGACGTCGCCGTGC
CGGGCACCTGCCTCACCGTGACGCTGGAGGGCAAGCGGCCCCTGGTCGCCGAGGTGCAGGCGCTCACCGTCGACTCGCAG
ATCCCCTCGCCCCGGCGGACGACCTCGGGCCTGGAGACCTCCCGGGTCTCGATGATGCTCGCGGTGCTGGAGCAGCGGGG
CCGGATCAGCGCGCTCGGCAAGCGGGACATCTACAGCGCGACGGTGGGCGGCGTGAAGCTCACCGAGCCCGCCGCCGACC
TGGCGGTCGCGCTCGCGCTGGCCAGCGCGGCCAGCGACACCCCGCTCCCGAAGAACCTGGTCGCGATCGGCGAGGTGGGG
CTCGCGGGCGAGGTCAGAAGGGTCACCGGAGTGCAGAGAAGACTGGCCGAGGCACACCGTCTGGGCTTCACCCACGCCCT
CGTGCCGACCGATCCGGGGAGGGTCCCGGCCGGTATGAAGGTCACGGAAGTCGCCGACATGGGCGACGCTCTGCGGGTCC
TCCCGCGCCGCTCTCGCCAGGAGGCACCACAGGAGGACAACGCGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(85-223)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4ILP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

96.383

0.421
  radA Streptococcus pneumoniae Rx1

44.522

91.277

0.406
  radA Streptococcus pneumoniae D39

44.522

91.277

0.406
  radA Streptococcus pneumoniae R6

44.522

91.277

0.406
  radA Streptococcus pneumoniae TIGR4

44.522

91.277

0.406
  radA Streptococcus mitis SK321

44.522

91.277

0.406
  radA Streptococcus mitis NCTC 12261

44.289

91.277

0.404