Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   AB1N70_RS14900 Genome accession   NZ_CP162603
Coordinates   3051476..3052132 (-) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli strain PEC1020     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3046476..3057132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1N70_RS14870 yecA 3047727..3048392 (-) 666 WP_000847881.1 UPF0149 family protein YecA -
  AB1N70_RS14890 pgsA 3049042..3049590 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB1N70_RS14895 uvrC 3049647..3051479 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  AB1N70_RS14900 letA 3051476..3052132 (-) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  AB1N70_RS14905 yecU 3052428..3052604 (+) 177 WP_000590347.1 protein YecU -
  AB1N70_RS14910 yecF 3052591..3052815 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  AB1N70_RS14915 sdiA 3052882..3053604 (-) 723 WP_001154271.1 transcriptional regulator SdiA -
  AB1N70_RS14920 tcyN 3053834..3054586 (-) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  AB1N70_RS14925 tcyL 3054583..3055251 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  AB1N70_RS14930 dcyD 3055266..3056252 (-) 987 WP_020232905.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=923981 AB1N70_RS14900 WP_000611328.1 3051476..3052132(-) (letA) [Escherichia coli strain PEC1020]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=923981 AB1N70_RS14900 WP_000611328.1 3051476..3052132(-) (letA) [Escherichia coli strain PEC1020]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAATGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCTGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATCCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482