Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCV44_RS05005 Genome accession   NZ_AP025510
Coordinates   1049953..1051341 (+) Length   462 a.a.
NCBI ID   WP_086049048.1    Uniprot ID   -
Organism   Vibrio tasmaniensis strain LMG 20012     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1044953..1056341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV44_RS04985 rsxB 1045350..1045943 (-) 594 WP_139684775.1 electron transport complex subunit RsxB -
  OCV44_RS04990 rsxA 1045946..1046524 (-) 579 WP_004734039.1 electron transport complex subunit RsxA -
  OCV44_RS05000 uvrB 1047619..1049649 (+) 2031 WP_139684774.1 excinuclease ABC subunit UvrB -
  OCV44_RS05005 luxO 1049953..1051341 (+) 1389 WP_086049048.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCV44_RS05010 luxU 1051366..1051710 (+) 345 WP_086049049.1 quorum-sensing phosphorelay protein LuxU -
  OCV44_RS05015 - 1051814..1052701 (-) 888 WP_139684773.1 YvcK family protein -
  OCV44_RS05020 moaA 1053037..1054026 (+) 990 WP_029223023.1 GTP 3',8-cyclase MoaA -
  OCV44_RS05025 moaB 1054383..1054895 (+) 513 WP_010437177.1 molybdenum cofactor biosynthesis protein B -
  OCV44_RS05030 moaC 1054908..1055387 (+) 480 WP_004734026.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCV44_RS05035 moaD 1055384..1055629 (+) 246 WP_009848640.1 molybdopterin synthase sulfur carrier subunit -
  OCV44_RS05040 moaE 1055632..1056105 (+) 474 WP_086049052.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51733.27 Da        Isoelectric Point: 6.1957

>NTDB_id=92364 OCV44_RS05005 WP_086049048.1 1049953..1051341(+) (luxO) [Vibrio tasmaniensis strain LMG 20012]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSAEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAEEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNVPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=92364 OCV44_RS05005 WP_086049048.1 1049953..1051341(+) (luxO) [Vibrio tasmaniensis strain LMG 20012]
ATGCAATCAAAAACGTTAGATAACAAATCGAAGTATTTGTTAATGGTAGAAGATACCGCGTCGGTAGCAGCGTTATATCG
ATCGTATCTTACACCGCTCGAAATTGACATTAACATTGTCGGCACTGGCCGCGATGCAATCGAGAGTTTGAACCATCGAA
TCCCAGACCTCATTTTATTAGATCTACGCCTGCCCGATATGACGGGTATGGATGTACTGTTTGCTGTAAAACAAAAATAT
CCTGAAGTTCCCGTTATCTTCATGACCGCTCACGGCTCTATTGATACCGCTGTAGAAGCGATGCGACATGGTTCCCAAGA
TTTCCTTATCAAACCGTGTGAAGCTGACCGACTGCGTATTACGGTGAACAACGCGATCCGCAAAGCGACAAAACTCAAAA
ACAGCGCTGAACATCCCGGTAATCAAAACTATCAAGGCTTCATTGGTAGCAGCCAAACCATGCAGCAGGTCTACCGAACG
ATCGATTCTGCCGCATCCAGTAAGGCCAGTATTTTCATCACGGGTGAAAGTGGTACCGGTAAAGAGGTGTGTGCTGAAGC
CATTCACGCTGCAAGCAAGCGTGGAGATAAGCCATTTATCGCGATCAACTGTGCAGCGATTCCTAAAGATCTGATTGAGA
GTGAGCTGTTTGGCCACGTTAAAGGTGCCTTTACTGGTGCTGCAACCGACCGTCAAGGTGCTGCTGAGCTTGCAGACGGT
GGAACACTGTTCCTCGATGAATTGTGTGAAATGGACTTAGAGTTGCAAACTAAGCTTCTGCGTTTCATTCAAACCGGTAC
TTTTCAAAAAGTCGGCTCTTCTAAGATGAAGAGTGTGGATGTTCGTTTCGTATGTGCAACCAACCGAGACCCTTGGAAAG
AAGTTCAAGAAGGTCGCTTTAGAGAAGATTTATACTACCGTTTATATGTGATTCCACTGCACTTGCCGCCATTGCGTGAG
CGTGGAGAGGATGTCATCGAGATTGCATATTCATTGCTGGGTTACATGTCTGTCGAAGAAGGCAAGGCGTTCGTACGTTT
TGCTGAAGAAGTACTCGATCGCTTTAATCAATATGAGTGGCCGGGGAACGTTCGTCAGTTACAAAATGTGTTGCGAAATG
TGGTGGTACTGAATAATGGTAAAGAGATTACTCTCAACATGCTTCCACCGCCATTGAACCAACCCATTGAAAACAGTCTT
CGTTTAAAAGAGAAGCAGAACGAAGACATCACGGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAAACGGCTATCGA
ACAGGCCATTAAAGCGTGTGACGGTAACGTTCCTCGTGCGGCAGGCTTCTTGGATGTCAGTCCATCGACGATATACCGTA
AATTGCAAACATGGAATGCGAAGCAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.161

96.97

0.836
  pilR Pseudomonas aeruginosa PAK

38.393

96.97

0.372

Multiple sequence alignment