Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   OCV44_RS02935 Genome accession   NZ_AP025510
Coordinates   606828..607433 (-) Length   201 a.a.
NCBI ID   WP_139685621.1    Uniprot ID   -
Organism   Vibrio tasmaniensis strain LMG 20012     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 601828..612433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV44_RS02925 aceF 602880..604769 (+) 1890 WP_139685622.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  OCV44_RS02930 lpdA 605012..606439 (+) 1428 WP_086048782.1 dihydrolipoyl dehydrogenase -
  OCV44_RS02935 opaR 606828..607433 (-) 606 WP_139685621.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OCV44_RS02940 hpt 607771..608301 (+) 531 WP_009847591.1 hypoxanthine phosphoribosyltransferase -
  OCV44_RS02945 can 608394..609053 (-) 660 WP_139685620.1 carbonate dehydratase -
  OCV44_RS02950 - 609340..610971 (+) 1632 WP_029223085.1 SulP family inorganic anion transporter -
  OCV44_RS02955 - 611293..612210 (+) 918 WP_139685619.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23210.47 Da        Isoelectric Point: 6.2915

>NTDB_id=92362 OCV44_RS02935 WP_139685621.1 606828..607433(-) (opaR) [Vibrio tasmaniensis strain LMG 20012]
MDSITKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKENLHNIATEMVTLVAHDSNWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHAPK
HLANLFHGICYSLFIQAKRIDTQEELSTLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=92362 OCV44_RS02935 WP_139685621.1 606828..607433(-) (opaR) [Vibrio tasmaniensis strain LMG 20012]
ATGGACTCAATAACGAAGAGACCTAGAACTAGGCTTTCACCCTTAAAAAGAAAACTTCAATTGATGGAAATCGCACTTGA
AGTATTCTCTCGCCGTGGCATTGGCCGCGGTGGACACGCTGATATTGCCGACATCGCTCAGGTGTCAGTAGCAACAGTAT
TTAACTACTTCCCTACCCGTGAAGATCTGGTTGATGAAGTACTTAACCACGTTGTTCGTCAATTCTCGAACTTCCTTTCA
GACAACATTGACCTAGATATTCACGCAAAAGAAAATCTACATAATATTGCGACTGAAATGGTGACCTTAGTGGCTCATGA
TAGCAATTGGTTAAACGTATGGTTCGAATGGAGTGCATCAACTCGCGATGAAGTATGGCCGCTATTCGTAACCACTAACC
GCACCAACCAAATGTTAGTGCAAAACATGTTTAGCAAGGCGATTGAACGCGGCGAAGTCTGTGACGATCACGCTCCTAAA
CATCTAGCGAACCTGTTCCACGGCATTTGTTACTCGCTATTCATCCAAGCGAAACGTATAGATACGCAAGAAGAACTTTC
GACCTTGACGGATAGCTACCTAAATATGCTGTGTATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

81.5

99.502

0.811
  hapR Vibrio cholerae C6706

72.864

99.005

0.721
  hapR Vibrio cholerae strain A1552

72.864

99.005

0.721

Multiple sequence alignment