Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OCV44_RS02575 Genome accession   NZ_AP025510
Coordinates   527870..528850 (+) Length   326 a.a.
NCBI ID   WP_086048752.1    Uniprot ID   -
Organism   Vibrio tasmaniensis strain LMG 20012     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 522870..533850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV44_RS02545 ispD 523078..523779 (+) 702 WP_139685037.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  OCV44_RS02550 ispF 523782..524261 (+) 480 WP_029223073.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  OCV44_RS02555 truD 524284..525330 (+) 1047 WP_139685036.1 tRNA pseudouridine(13) synthase TruD -
  OCV44_RS02560 surE 525451..526194 (+) 744 WP_139685035.1 5'/3'-nucleotidase SurE -
  OCV44_RS02565 - 526195..526821 (+) 627 WP_139685034.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  OCV44_RS02570 nlpD 526857..527771 (+) 915 WP_029225456.1 murein hydrolase activator NlpD -
  OCV44_RS02575 rpoS 527870..528850 (+) 981 WP_086048752.1 RNA polymerase sigma factor RpoS Regulator
  OCV44_RS02580 mutS 528995..531556 (-) 2562 WP_086048753.1 DNA mismatch repair protein MutS -
  OCV44_RS02585 pncC 531681..532175 (+) 495 WP_086050375.1 nicotinamide-nucleotide amidase -
  OCV44_RS02590 recA 532315..533355 (+) 1041 WP_086048754.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 37219.41 Da        Isoelectric Point: 5.2708

>NTDB_id=92354 OCV44_RS02575 WP_086048752.1 527870..528850(+) (rpoS) [Vibrio tasmaniensis strain LMG 20012]
MSISNAVTKEEFDLNQATTEPEALGKAKRTVTKKTEAKEETEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide


Download         Length: 981 bp        

>NTDB_id=92354 OCV44_RS02575 WP_086048752.1 527870..528850(+) (rpoS) [Vibrio tasmaniensis strain LMG 20012]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGCAACCACGGAACCGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAGACTGAAGTTACGTCTAAAAGCTTAGATGCGACTCAACTCT
ACTTAGGCGAAATTGGTTTCTCACCACTATTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCACGCAAACGCATGATCGAAAGTAACCTGCGTTTGGTGGTAAAAATTTCTCGTCGTTATAGCAACCGTGGTCT
TGCACTTCTCGATCTGATCGAAGAAGGCAACCTAGGCTTGATCCGCGCCGTAGAGAAGTTTGATCCAGAGCGTGGCTTCC
GCTTCTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCGCTAATGAATCAGACTCGCACTATCCGTTTG
CCAATTCATGTTGTGAAAGAGCTGAATATCTACCTGCGTACGGCACGAGAGCTATCTCAAAAACTTGACCACGAACCAAC
GGCTGAAGAGATCGCTTCTAAGCTAGATAAACCAGTTGGTGATGTGAGTAAGATGCTTCGTCTAAACGAAAGAGTGAGCT
CCGTTGATACGCCTATTGGTGGTGATGGTGAGAAAGCACTGTTAGATATTATTCCAGACATCAACAATTCAGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTTGATGAGCTGAATCCTAAGCAGAAAGAGGTGCT
TGCGCGTCGCTTTGGATTACTTGGCTATGAACCATCAACACTAGAAGAAGTAGGCCGTGAAATTAGTCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGTGAGATTCTTATCAAGCAAGGCTTGAATATGGAAAATCTG
TTCAACGTAGAAAACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(49-82)

Sigma-70 region 3 (Sigma70_r3)

(167-240)

Sigma-70, region 4 (Sigma70_r4)

(255-308)

Sigma-70 region 2 (Sigma70_r2)

(87-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

81.138

100

0.831

Multiple sequence alignment