Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OCU90_RS17295 Genome accession   NZ_AP025508
Coordinates   3838203..3839726 (-) Length   507 a.a.
NCBI ID   WP_004735753.1    Uniprot ID   A0A7W4CAC5
Organism   Vibrio splendidus strain LMG 19031     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3833203..3844726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU90_RS17270 - 3833243..3833506 (+) 264 WP_004735759.1 YihD family protein -
  OCU90_RS17275 ccoG 3833833..3835251 (+) 1419 WP_004735757.1 cytochrome c oxidase accessory protein CcoG -
  OCU90_RS17280 - 3835326..3836312 (+) 987 WP_004735756.1 serine/threonine protein kinase -
  OCU90_RS17285 - 3836368..3836967 (+) 600 WP_004735755.1 thiol:disulfide interchange protein DsbA/DsbL -
  OCU90_RS17290 - 3837108..3838061 (+) 954 WP_061025218.1 DUF2860 domain-containing protein -
  OCU90_RS17295 comM 3838203..3839726 (-) 1524 WP_004735753.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OCU90_RS17300 ilvG 3840199..3841845 (+) 1647 WP_017107540.1 acetolactate synthase 2 catalytic subunit -
  OCU90_RS17305 ilvM 3841847..3842131 (+) 285 WP_017077311.1 acetolactate synthase 2 small subunit -
  OCU90_RS17310 - 3842144..3843112 (+) 969 WP_004735750.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55592.70 Da        Isoelectric Point: 7.6532

>NTDB_id=92333 OCU90_RS17295 WP_004735753.1 3838203..3839726(-) (comM) [Vibrio splendidus strain LMG 19031]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASDQLPTSKIAQHEFIGELALSGELRSVKGVLPATLAADSVERCLVVPHHNGDQAALVGKGAHKSAQTL
LEVCADMCGQAQLGLYRTEHHHVDVSDNRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSD
DEAMETASVASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRVAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTQVVKQRVKQARQLMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGNEQ
IEKKHLSEALGYRAMDRLLKQLSAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=92333 OCU90_RS17295 WP_004735753.1 3838203..3839726(-) (comM) [Vibrio splendidus strain LMG 19031]
ATGGGACTCGCGATAATTCACAGCCGGGCTAGTGTGGGAGTAGAGGCACCAGAAGTGACCGTTGAAGTGCATATAAGCAA
CGGTATGCCTGGGTTTACATTGGTGGGGCTACCTGAAACGACGGTCAAGGAATCTAAAGATCGAGTCAGGAGTGCCATCA
TCAATTCTCGCTTTGAATTTCCATCGAAAAGGATCACGGTCAACCTCGCGCCTGCTGATTTACCTAAGGAGGGAGGACGT
TTCGATCTGCCAATCGCGCTTGGGATTTTGGTGGCGTCAGATCAGCTTCCGACATCAAAAATAGCTCAACATGAATTTAT
CGGTGAGTTGGCATTGTCAGGAGAGTTGCGCTCGGTAAAGGGCGTTCTGCCTGCGACGTTAGCCGCCGATAGTGTCGAGC
GATGCTTAGTGGTTCCACATCACAATGGTGATCAGGCGGCCTTAGTCGGCAAGGGGGCCCATAAATCAGCGCAAACCTTG
CTAGAGGTTTGTGCGGATATGTGTGGCCAGGCTCAGCTTGGTTTATATCGAACCGAGCATCATCATGTCGATGTGTCTGA
TAATCGTGACTTACAAGATATTATTGGCCAGCAGCAAGGTAAGCGAGCACTGGAGATCGCTGCTGCTGGTAACCATAACC
TACTTTTTCTCGGCCCGCCTGGAACTGGGAAAACCATGTTGGCTTCTCGATTGCGCGATTTGTTACCTGAGATGAGTGAC
GACGAGGCGATGGAAACCGCTTCGGTGGCTTCTTTAACGCAACAAGAGATTAATCAATACAACTGGAAACAACGACCTTT
CCGTTCCCCACACCATTCGAGTTCGATGGCAGCATTGGTCGGTGGTGGCTCGATACCTCGCCCCGGTGAGATATCTTTGG
CGCATAATGGCTTATTGTTTCTTGATGAGATGCCAGAGTTTGAGCGTAAGGTGCTTGATTCACTGCGAGAGCCGCTAGAG
TCGGGTGAAATCATTATCTCCCGTGTCGCGGGTAAGACTCGCTTTCCTGCTCGCTTTCAATTAGTCGGTGCACTTAACCC
AAGCCCAACAGGTTATTACGAGGGCAATCAAGCTCGAGCGAACCCGCAAATTATCCTGCGCTACCTCAACCGCTTATCTG
GGCCATTATTGGATAGATTCGATATGTCATTGGAGATCCCTCTATTGCCCAAAGGGATGTTAGCCGAAGGAGGCGATCGT
GGAGAAACCACTCAAGTCGTGAAGCAACGAGTTAAACAAGCGCGTCAGTTGATGTTATCTCGAAACCATAAGTCGAATGC
ACTGTTAGGTAGCCGAGAAATTGAAAAGTATTGCCCATTGCGACGCGAAGATGCGGAGTTTCTCGAGACCGCACTGCATC
GATTGGGTTTATCGATTCGTGCCTATCATCGAATCATCAAGGTAGCGCGAACTATTGCAGACTTAGAGGGTAACGAGCAG
ATTGAAAAGAAGCATTTATCGGAGGCGCTTGGCTATCGAGCGATGGATCGCTTGCTGAAACAACTTTCAGCTCAAGCTGT
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W4CAC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.826

100

0.838
  comM Vibrio campbellii strain DS40M4

83.235

100

0.832
  comM Haemophilus influenzae Rd KW20

65.483

100

0.655
  comM Glaesserella parasuis strain SC1401

63.086

100

0.637
  comM Legionella pneumophila str. Paris

48.589

97.83

0.475
  comM Legionella pneumophila strain ERS1305867

48.589

97.83

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.49

99.803

0.424

Multiple sequence alignment