Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AB3429_RS13945 Genome accession   NZ_CP162465
Coordinates   2801561..2802247 (-) Length   228 a.a.
NCBI ID   WP_001793467.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM20825     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2796561..2807247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3429_RS13925 (AB3429_13925) rpsT 2797475..2797726 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  AB3429_RS13930 (AB3429_13930) holA 2797771..2798745 (-) 975 WP_001282568.1 DNA polymerase III subunit delta -
  AB3429_RS13935 (AB3429_13935) comEC 2798802..2801003 (-) 2202 WP_172576660.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB3429_RS13940 (AB3429_13940) - 2801008..2801469 (-) 462 WP_000439693.1 ComE operon protein 2 -
  AB3429_RS13945 (AB3429_13945) comEA 2801561..2802247 (-) 687 WP_001793467.1 ComEA family DNA-binding protein Machinery gene
  AB3429_RS13950 (AB3429_13950) - 2802287..2803003 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  AB3429_RS13955 (AB3429_13955) rsfS 2803006..2803359 (-) 354 WP_001088022.1 ribosome silencing factor -
  AB3429_RS13960 (AB3429_13960) yqeK 2803360..2803944 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  AB3429_RS13965 (AB3429_13965) nadD 2803934..2804503 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  AB3429_RS13970 (AB3429_13970) yhbY 2804506..2804796 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  AB3429_RS13975 (AB3429_13975) aroE 2804800..2805606 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  AB3429_RS13980 (AB3429_13980) yqeH 2805620..2806720 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25786.50 Da        Isoelectric Point: 9.6753

>NTDB_id=923248 AB3429_RS13945 WP_001793467.1 2801561..2802247(-) (comEA) [Staphylococcus aureus strain TUM20825]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDNALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=923248 AB3429_RS13945 WP_001793467.1 2801561..2802247(-) (comEA) [Staphylococcus aureus strain TUM20825]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATAATG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

100

100

1
  comEA Staphylococcus aureus N315

97.368

100

0.974