Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OCU90_RS14640 Genome accession   NZ_AP025508
Coordinates   3310824..3311804 (-) Length   326 a.a.
NCBI ID   WP_054541876.1    Uniprot ID   -
Organism   Vibrio splendidus strain LMG 19031     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3305824..3316804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU90_RS14625 recA 3306319..3307359 (-) 1041 WP_004735435.1 recombinase RecA Machinery gene
  OCU90_RS14630 pncC 3307499..3307993 (-) 495 WP_029222254.1 nicotinamide-nucleotide amidase -
  OCU90_RS14635 mutS 3308118..3310679 (+) 2562 WP_061022527.1 DNA mismatch repair protein MutS -
  OCU90_RS14640 rpoS 3310824..3311804 (-) 981 WP_054541876.1 RNA polymerase sigma factor RpoS Regulator
  OCU90_RS14645 nlpD 3311903..3312817 (-) 915 WP_029222472.1 murein hydrolase activator NlpD -
  OCU90_RS14650 - 3312852..3313478 (-) 627 WP_061022528.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  OCU90_RS14655 surE 3313479..3314222 (-) 744 WP_016795280.1 5'/3'-nucleotidase SurE -
  OCU90_RS14660 truD 3314299..3315345 (-) 1047 WP_029405999.1 tRNA pseudouridine(13) synthase TruD -
  OCU90_RS14665 ispF 3315368..3315847 (-) 480 WP_004735397.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  OCU90_RS14670 ispD 3315850..3316551 (-) 702 WP_061022530.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 37258.54 Da        Isoelectric Point: 5.4396

>NTDB_id=92320 OCU90_RS14640 WP_054541876.1 3310824..3311804(-) (rpoS) [Vibrio splendidus strain LMG 19031]
MSISNAVTKEEFDLNQATTEPEALGKAKRTVKKKTEAKEEVEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVENE

Nucleotide


Download         Length: 981 bp        

>NTDB_id=92320 OCU90_RS14640 WP_054541876.1 3310824..3311804(-) (rpoS) [Vibrio splendidus strain LMG 19031]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGCAACCACGGAACCGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCAAAAAGAAAACCGAAGCGAAAGAAGAAGTCGAAGTTACGTCTAAAAGTTTAGATGCTACTCAACTCT
ACTTAGGCGAAATCGGTTTCTCACCACTATTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCACGTAAGCGCATGATCGAAAGTAACCTGCGTTTGGTGGTAAAAATTTCTCGTCGTTATAGCAACCGTGGTCT
TGCACTTCTCGATCTTATTGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGATCCAGAGCGTGGCTTCC
GTTTCTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCGCTAATGAATCAGACTCGCACTATCCGTTTG
CCAATTCATGTTGTGAAAGAGCTGAATATCTACCTGCGTACGGCACGAGAGTTATCACAAAAACTTGACCACGAACCAAC
GGCAGAAGAAATTGCTTCTAAGCTAGATAAGCCAGTCGGTGATGTGAGTAAGATGCTTCGTCTAAACGAAAGAGTGAGCT
CCGTTGATACGCCTATCGGTGGTGATGGTGAGAAAGCGCTACTGGATATTATTCCTGACATCAATAACTCAGATCCTGAG
GTTTCAACTCAAGATAGCGATATTAAAAACTCGTTGATTTTCTGGCTTGATGAGCTGAATCCTAAGCAGAAAGAGGTGCT
TGCGCGTCGCTTTGGATTACTTGGCTATGAACCATCAACACTAGAAGAAGTAGGCCGTGAAATTAGCCTAACTCGTGAAC
GTGTTCGCCAAATCCAAGTTGAAGGTCTTCGTCGTTTACGTGAGATTCTAATCAAGCAAGGTCTGAATATGGAAAATCTG
TTCAACGTAGAAAATGAATAA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(87-156)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(49-82)

Sigma-70 region 3 (Sigma70_r3)

(167-240)

Sigma-70, region 4 (Sigma70_r4)

(255-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

81.325

100

0.828

Multiple sequence alignment