Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   OCU90_RS14415 Genome accession   NZ_AP025508
Coordinates   3266167..3266772 (+) Length   201 a.a.
NCBI ID   WP_017079965.1    Uniprot ID   A0A1R3EZ21
Organism   Vibrio splendidus strain LMG 19031     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3261167..3271772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU90_RS14395 - 3261401..3262318 (-) 918 WP_017084273.1 ABC transporter ATP-binding protein -
  OCU90_RS14400 - 3262641..3264272 (-) 1632 WP_029222729.1 SulP family inorganic anion transporter -
  OCU90_RS14405 can 3264560..3265219 (+) 660 WP_004735453.1 carbonate dehydratase -
  OCU90_RS14410 hpt 3265299..3265829 (-) 531 WP_004735452.1 hypoxanthine phosphoribosyltransferase -
  OCU90_RS14415 opaR 3266167..3266772 (+) 606 WP_017079965.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OCU90_RS14420 lpdA 3267075..3268502 (-) 1428 WP_004735450.1 dihydrolipoyl dehydrogenase -
  OCU90_RS14425 aceF 3268745..3270634 (-) 1890 WP_061022511.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23217.47 Da        Isoelectric Point: 6.4040

>NTDB_id=92313 OCU90_RS14415 WP_017079965.1 3266167..3266772(+) (opaR) [Vibrio splendidus strain LMG 19031]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKQNLHNIATEMVTLVAHDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVETPEELSSLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=92313 OCU90_RS14415 WP_017079965.1 3266167..3266772(+) (opaR) [Vibrio splendidus strain LMG 19031]
ATGGACTCAATATCTAAGAGACCTAGAACTAGGCTTTCACCTTTAAAAAGAAAACTTCAATTGATGGAAATCGCTCTTGA
GGTATTCTCTCGCCGCGGTATTGGTCGTGGTGGACACGCTGATATTGCAGACATCGCTCAGGTGTCTGTAGCAACGGTAT
TTAATTACTTCCCGACCCGTGAAGATCTGGTTGATGAAGTGCTTAATCATGTTGTACGCCAATTCTCTAACTTCCTTTCA
GACAATATCGATCTGGATATTCACGCAAAACAAAACCTACATAATATTGCGACTGAAATGGTGACGTTAGTGGCTCACGA
TAGCCATTGGTTGAACGTATGGTTTGAATGGAGCGCTTCGACTCGTGATGAAGTATGGCCTCTATTCGTAACCACCAACC
GCACTAACCAAATGTTAGTACAAAACATGTTTAGCAAAGCGATTGAACGCGGCGAAGTTTGCGACGATCACGATCCTAAA
CATCTAGCGAACCTATTCCACGGCATCTGCTACTCACTGTTCATTCAAGCGAAACGTGTAGAAACGCCAGAAGAGCTTTC
AAGCTTAACGGATAGTTACTTGAACATGCTGTGCATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R3EZ21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

82

99.502

0.816
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726

Multiple sequence alignment