Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCU90_RS12085 Genome accession   NZ_AP025508
Coordinates   2726735..2728123 (-) Length   462 a.a.
NCBI ID   WP_004734031.1    Uniprot ID   A0A0T7ERT3
Organism   Vibrio splendidus strain LMG 19031     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2721735..2733123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU90_RS12050 moaE 2721950..2722423 (-) 474 WP_004734024.1 molybdopterin synthase catalytic subunit MoaE -
  OCU90_RS12055 moaD 2722426..2722671 (-) 246 WP_061021879.1 molybdopterin synthase sulfur carrier subunit -
  OCU90_RS12060 moaC 2722668..2723147 (-) 480 WP_004734026.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCU90_RS12065 moaB 2723160..2723672 (-) 513 WP_017084034.1 molybdenum cofactor biosynthesis protein B -
  OCU90_RS12070 moaA 2724031..2725020 (-) 990 WP_029406079.1 GTP 3',8-cyclase MoaA -
  OCU90_RS12075 - 2725356..2726243 (+) 888 WP_061021881.1 YvcK family protein -
  OCU90_RS12080 luxU 2726366..2726710 (-) 345 WP_061021883.1 quorum-sensing phosphorelay protein LuxU -
  OCU90_RS12085 luxO 2726735..2728123 (-) 1389 WP_004734031.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCU90_RS12090 uvrB 2728426..2730456 (-) 2031 WP_017084035.1 excinuclease ABC subunit UvrB -
  OCU90_RS12100 - 2731337..2731777 (-) 441 WP_004734033.1 hypothetical protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51762.31 Da        Isoelectric Point: 6.4047

>NTDB_id=92311 OCU90_RS12085 WP_004734031.1 2726735..2728123(-) (luxO) [Vibrio splendidus strain LMG 19031]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=92311 OCU90_RS12085 WP_004734031.1 2726735..2728123(-) (luxO) [Vibrio splendidus strain LMG 19031]
ATGCAATCAAAAACGCTAGATAACAAATCGAAGTATTTGTTGATGGTAGAGGATACCGCTTCGGTAGCAGCTTTATATCG
CTCGTATCTTACACCGCTCGAAATTGATATCAACATTGTCGGCACTGGCCGCGATGCAATCGAGAGTTTGAATCATCGAA
TCCCAGACCTTATTTTATTAGATCTACGTCTGCCTGACATGACGGGTATGGACGTGCTATTTGCTGTAAAACAAAAATAC
CCTGAAGTTCCGGTTATCTTCATGACGGCTCACGGTTCTATCGATACCGCCGTAGAAGCCATGCGTCATGGTTCTCAAGA
TTTCCTTATCAAGCCGTGTGAAGCCGACCGACTCCGTATTACGGTGAACAACGCGATCCGCAAAGCCACCAAACTTAAAA
ACAGCTCGGAACACCCGGGAAACCAAAATTACCAAGGTTTTATTGGTAGCAGCCAAACCATGCAGCAGGTTTACCGAACT
ATCGACTCTGCAGCATCGAGTAAAGCCAGTATTTTCATCACGGGTGAAAGTGGTACGGGTAAAGAGGTATGTGCAGAAGC
TATTCATGCGGCGAGCAAGCGTGGTGACAAGCCTTTCATCGCGATTAACTGTGCGGCTATCCCTAAAGATCTAATTGAAA
GTGAGCTATTTGGCCACGTTAAAGGCGCCTTTACCGGTGCTGCAACTGATCGTCAAGGTGCCGCTGAACTGGCTGATGGC
GGAACACTATTCCTTGATGAATTGTGCGAAATGGACTTAGAGCTGCAAACCAAGCTGCTGCGCTTTATCCAAACCGGTAC
TTTTCAAAAAGTTGGCTCTTCGAAGATGAAGAGTGTCGATGTTCGTTTCGTATGTGCAACCAACCGTGACCCTTGGAAAG
AAGTACAAGAAGGTCGCTTTAGAGAAGATTTATACTATCGTTTATACGTGATTCCATTGCACCTGCCGCCATTGCGCGAG
CGCGGTGAAGATGTAATCGAGATTGCGTACTCGTTACTAGGTTACATGTCGGTTGAGGAAGGTAAGGCGTTTGTGCGTTT
TGCTCAGGAAGTGCTTGATCGCTTTAATCAATATGAGTGGCCGGGTAACGTTCGTCAGCTACAAAACGTATTACGGAACG
TGGTGGTATTGAATAACGGCAAAGAGATTACTCTCAACATGCTTCCACCACCATTGAACCAACCGATTGAAAACAGCTTG
CGCTTGAAAGAGAAGCAGAACGAAGACATCACGGTAAAAGATATTTTTCCATTGTGGATCACTGAGAAGACGGCTATCGA
ACAGGCCATAAAAGCGTGTGACGGCAACATTCCCCGCGCGGCCGGTTTCTTAGATGTCAGTCCATCGACGATATACCGTA
AGTTGCAAACGTGGAATGCGAAGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T7ERT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

96.97

0.838
  pilR Pseudomonas aeruginosa PAK

38.085

97.186

0.37

Multiple sequence alignment