Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   VRC39_RS23495 Genome accession   NZ_CP142193
Coordinates   5196972..5197379 (-) Length   135 a.a.
NCBI ID   WP_003234584.1    Uniprot ID   A0AAP2WFC8
Organism   Pseudomonas poae strain B12_1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5191972..5202379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRC39_RS23480 (VRC39_23480) - 5193975..5196026 (-) 2052 WP_003234581.1 methyl-accepting chemotaxis protein -
  VRC39_RS23485 (VRC39_23485) - 5196023..5196547 (-) 525 WP_338506276.1 chemotaxis protein CheW -
  VRC39_RS23490 (VRC39_23490) pilH 5196560..5196925 (-) 366 WP_003234583.1 twitching motility response regulator PilH -
  VRC39_RS23495 (VRC39_23495) pilG 5196972..5197379 (-) 408 WP_003234584.1 twitching motility response regulator PilG Regulator
  VRC39_RS23500 (VRC39_23500) gshB 5197620..5198573 (+) 954 WP_338506278.1 glutathione synthase -
  VRC39_RS23505 (VRC39_23505) - 5198650..5199555 (+) 906 WP_003234587.1 energy transducer TonB -
  VRC39_RS23510 (VRC39_23510) - 5199623..5200192 (+) 570 WP_060548139.1 YqgE/AlgH family protein -
  VRC39_RS23515 (VRC39_23515) ruvX 5200192..5200629 (+) 438 WP_003234589.1 Holliday junction resolvase RuvX -
  VRC39_RS23520 (VRC39_23520) pyrR 5200704..5201210 (+) 507 WP_003234590.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  VRC39_RS23525 (VRC39_23525) - 5201235..5202239 (+) 1005 WP_003234591.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14830.37 Da        Isoelectric Point: 7.3533

>NTDB_id=922988 VRC39_RS23495 WP_003234584.1 5196972..5197379(-) (pilG) [Pseudomonas poae strain B12_1]
MEQHSNALRVMVIDDSKTIRRTAETLLKNVGCDVITAIDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
AIPVIMLSSKDGLFDKAKGRIVGVDQFLTKPFSKEELLGAIKACVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=922988 VRC39_RS23495 WP_003234584.1 5196972..5197379(-) (pilG) [Pseudomonas poae strain B12_1]
ATGGAACAGCATTCCAACGCCTTGAGAGTGATGGTGATCGACGATTCGAAAACGATCCGCCGCACCGCCGAGACCCTGTT
GAAGAACGTGGGCTGCGACGTGATCACGGCCATCGACGGTTTCGATGCCCTGGCGCGGATTGTCGATCATCACCCGCACA
TTATCTTTGTCGACATCATGATGCCGCGCCTGGATGGCTACCAGACTTGCGCGCTGGTGAAGAACAACCCGGCGTTCAAG
GCGATCCCGGTGATCATGCTGTCGTCCAAAGACGGTCTGTTCGACAAGGCCAAGGGTCGCATCGTGGGGGTCGATCAGTT
TTTGACCAAGCCGTTCAGCAAGGAAGAACTGCTGGGCGCGATCAAGGCCTGCGTGCCGGGGTTTGCCGCAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

71.311

90.37

0.644
  vicR Streptococcus mutans UA159

38.889

93.333

0.363