Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   VRB33_RS14925 Genome accession   NZ_CP142190
Coordinates   3353010..3355235 (-) Length   741 a.a.
NCBI ID   WP_338505783.1    Uniprot ID   -
Organism   Pseudomonas poae strain B12_5     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3348010..3360235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRB33_RS14890 (VRB33_14890) murB 3348379..3349398 (-) 1020 WP_236325157.1 UDP-N-acetylmuramate dehydrogenase -
  VRB33_RS14895 (VRB33_14895) - 3349395..3349859 (-) 465 WP_169895495.1 low molecular weight protein-tyrosine-phosphatase -
  VRB33_RS14900 (VRB33_14900) kdsB 3349859..3350623 (-) 765 WP_003232162.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VRB33_RS14905 (VRB33_14905) - 3350620..3350805 (-) 186 WP_003174668.1 Trm112 family protein -
  VRB33_RS14910 (VRB33_14910) lpxK 3350830..3351840 (-) 1011 WP_003232161.1 tetraacyldisaccharide 4'-kinase -
  VRB33_RS14915 (VRB33_14915) - 3351840..3352268 (-) 429 WP_003232159.1 biopolymer transporter ExbD -
  VRB33_RS14920 (VRB33_14920) exbB 3352265..3352900 (-) 636 WP_015372391.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VRB33_RS14925 (VRB33_14925) comA 3353010..3355235 (-) 2226 WP_338505783.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VRB33_RS14930 (VRB33_14930) - 3355371..3355886 (+) 516 WP_003232152.1 DUF2062 domain-containing protein -
  VRB33_RS14935 (VRB33_14935) - 3356022..3358775 (+) 2754 WP_236325152.1 response regulator -
  VRB33_RS14940 (VRB33_14940) - 3358857..3359297 (+) 441 WP_236325150.1 hypothetical protein -
  VRB33_RS14945 (VRB33_14945) - 3359294..3359695 (+) 402 WP_236325148.1 META domain-containing protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80373.22 Da        Isoelectric Point: 10.6603

>NTDB_id=922909 VRB33_RS14925 WP_338505783.1 3353010..3355235(-) (comA) [Pseudomonas poae strain B12_5]
MKTGMFALALGLLALRFLPALPATGWLLAMSVLALMLLPFRTFALAFFLFGVSWACISAQWALDDRLTSALDGQTRWLEG
RVVGLPQQTSSGVRFELADSRSRNARLPRRIRVSWHGGPAVHSGERWRLAVTLKRPSGLLNVHGFDHEAWLLAQRIGATG
TVKDGERLTPARNAWRDALRQRLMAVDAQGREAGLAALVLGDGSGLADEDWQVLQDTGTVHLLVISGQHVGLLAGLIYGL
IALLARYGCWPATWPWLPWACGLAFVAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLALNGVLVLEPL
ASLQPGFWLSFGAVAVLILAFGGRLGPWSLWQAWTRPQWLIAIGLFPLLLILGLPISLSAPLANLIAVPWISLVVLPLAL
LRTVLLAVPLVGEVVLWLAGGALDLLFQGLALLAGYLPAWIPAEVSLGYWLVSLAGAVIVLLPGGVPFRLLGWPMLLLAV
FPPREPVPHGRAEVLQLDVGQGQAIVLRTRHHTLLYDAGPRSRATDLGARVVLPSLKKLGIASLDLMLISHADADHAGGA
AAVVRGLPVKRVVGGETDGLPGFLGTQPCLSGERWEWDGVSFELWQWPGAVDGNPKSCVLQVQANGERLLLTGDIDRAAE
RALLDSPLAQRTDWLQVPHHGSRSSSSRPFVQQLAPTSVLISRGRGNAFGHPHAQVMERYRALGSRVYDSAEHGAVRLQL
GAFQPAQVARAQRRFWREPLR

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=922909 VRB33_RS14925 WP_338505783.1 3353010..3355235(-) (comA) [Pseudomonas poae strain B12_5]
ATGAAGACAGGGATGTTCGCCTTGGCGCTGGGGTTGCTGGCCCTGCGTTTTCTACCGGCATTGCCGGCGACGGGATGGCT
GCTGGCCATGTCGGTATTGGCCTTGATGCTGTTGCCGTTTCGCACCTTCGCGCTGGCCTTTTTTCTGTTCGGTGTGAGTT
GGGCGTGCATCAGCGCGCAATGGGCGTTGGATGACCGTTTAACCTCAGCCCTGGACGGCCAGACACGCTGGCTGGAGGGA
AGGGTGGTCGGGTTGCCACAGCAAACATCCAGCGGCGTGCGCTTCGAGCTGGCCGACAGCCGGTCACGCAATGCCCGTTT
GCCCAGGCGCATCCGGGTGTCCTGGCATGGTGGACCGGCGGTGCATAGCGGCGAGCGCTGGCGGTTGGCCGTGACCCTGA
AGCGACCGTCCGGGCTGCTCAACGTTCATGGGTTCGATCACGAAGCCTGGCTGTTGGCGCAGCGTATCGGCGCGACCGGT
ACGGTAAAGGACGGCGAGCGCCTGACGCCGGCCCGCAACGCCTGGCGCGATGCGCTGCGCCAGCGCCTGATGGCGGTGGA
TGCCCAGGGCCGCGAAGCGGGATTGGCCGCGCTGGTGCTGGGTGACGGCTCCGGGCTGGCGGACGAAGACTGGCAAGTGT
TGCAGGACACCGGCACCGTGCACCTGCTGGTGATCTCCGGCCAGCACGTAGGCTTGTTGGCGGGGTTGATCTATGGGTTG
ATCGCGTTGCTGGCGCGTTATGGTTGCTGGCCCGCCACCTGGCCGTGGTTGCCCTGGGCCTGTGGGCTGGCGTTTGTTGC
AGCACTGGGTTACGGCCTGCTGGCAGGGTTCGGCGTGCCAGTGCAGCGGGCCTGCGTCATGGTGGGCCTGGTGTTGCTGT
GGCGCTTGCGCTTTCGCCATCTGGGTGCCTGGTGGCCGTTGCTGCTGGCACTCAACGGGGTGCTGGTGCTGGAGCCGTTG
GCCAGTCTGCAGCCCGGATTCTGGTTATCGTTCGGTGCCGTTGCCGTTTTGATACTGGCCTTTGGCGGACGATTGGGCCC
CTGGAGCCTTTGGCAGGCCTGGACGCGCCCGCAGTGGTTGATCGCCATCGGTCTTTTCCCCTTGTTGTTGATACTGGGTT
TGCCGATCAGCCTGAGTGCTCCCTTGGCCAATCTGATTGCTGTTCCGTGGATCAGTCTTGTGGTGTTGCCGTTGGCATTG
CTGAGGACTGTCCTGCTGGCGGTGCCGTTGGTGGGGGAGGTCGTGCTGTGGTTGGCGGGTGGCGCATTGGACCTGTTGTT
CCAGGGTCTTGCCTTGCTGGCCGGGTACCTGCCGGCGTGGATACCGGCTGAAGTGTCTTTGGGGTACTGGCTGGTGAGTC
TGGCCGGCGCGGTGATCGTGCTGCTGCCCGGCGGCGTGCCTTTTCGGCTGTTGGGCTGGCCGATGCTGTTGCTGGCGGTG
TTTCCACCGCGCGAGCCGGTGCCCCATGGACGGGCCGAGGTTTTGCAGCTGGATGTTGGGCAGGGGCAGGCGATTGTCCT
GCGTACCCGTCATCACACCCTGCTTTACGATGCCGGCCCCCGTTCGCGGGCCACAGACCTGGGCGCGCGGGTGGTGTTGC
CGTCGCTGAAAAAACTCGGTATCGCGTCACTGGATTTGATGCTGATCAGCCACGCCGATGCCGACCATGCCGGCGGGGCG
GCCGCAGTGGTGCGAGGGCTGCCGGTCAAGCGCGTGGTGGGCGGTGAAACCGACGGCCTGCCCGGGTTTCTCGGCACTCA
ACCGTGTCTCAGTGGCGAACGCTGGGAGTGGGACGGCGTGTCATTCGAGCTGTGGCAATGGCCTGGCGCCGTCGACGGCA
ATCCGAAGTCCTGCGTGTTGCAGGTACAGGCCAACGGCGAACGGTTGCTGCTCACCGGCGATATTGATCGCGCCGCCGAG
CGTGCCTTGCTCGACTCGCCGCTGGCGCAACGCACCGACTGGCTGCAGGTCCCCCACCATGGTAGCCGCAGTTCGTCGTC
CCGGCCTTTTGTGCAGCAGTTGGCACCCACGTCGGTGCTGATCTCCCGTGGGCGTGGCAATGCATTCGGTCATCCTCATG
CCCAGGTCATGGAGCGTTACCGGGCATTGGGCAGCCGCGTGTATGACAGCGCCGAGCACGGTGCGGTGCGCCTGCAATTG
GGGGCCTTCCAGCCGGCGCAGGTTGCACGCGCGCAACGCCGGTTCTGGCGTGAACCGTTACGCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-672)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.223

97.031

0.584
  comA Ralstonia pseudosolanacearum GMI1000

34.14

100

0.362