Detailed information NTG0092274

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: QQK36_RS21325
• Genome accession: NZ_AP027978
• Coordinates: 4360821..4361846 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain VE-V11-M
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4355821..4366846

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQK36_RS21305 (VEV11M_41290)	metJ	4356883..4357200 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
QQK36_RS21310 (VEV11M_41300)	yiiX	4357384..4357992 (+)	609	WP_000797341.1	YiiX family permuted papain-like enzyme	-
QQK36_RS21315 (VEV11M_41310)	rpmE	4358052..4358264 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
QQK36_RS21320 (VEV11M_41320)	priA	4358467..4360665 (+)	2199	WP_001324365.1	primosomal protein N'	Machinery gene
QQK36_RS21325 (VEV11M_41330)	cytR	4360821..4361846 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
QQK36_RS21330 (VEV11M_41340)	ftsN	4361938..4362897 (+)	960	WP_000068837.1	cell division protein FtsN	-
QQK36_RS21335 (VEV11M_41350)	hslV	4362990..4363520 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
QQK36_RS21340 (VEV11M_41360)	hslU	4363530..4364861 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
QQK36_RS21345 (VEV11M_41370)	menA	4364928..4365854 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
QQK36_RS21350 (VEV11M_41380)	rraA	4365947..4366432 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
QQK36_RS21355 (VEV11M_41390)	zapB	4366517..4366762 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=92274 QQK36_RS21325 WP_000644904.1 4360821..4361846(+) (cytR) [Escherichia coli strain VE-V11-M]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=92274 QQK36_RS21325 WP_000644904.1 4360821..4361846(+) (cytR) [Escherichia coli strain VE-V11-M]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAACCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGCTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628