Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   OCV12_RS13345 Genome accession   NZ_AP025506
Coordinates   3067676..3068281 (+) Length   201 a.a.
NCBI ID   WP_048664508.1    Uniprot ID   A0A2N7JXS8
Organism   Vibrio pomeroyi strain LMG 20537     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3062676..3073281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV12_RS13325 - 3062913..3063830 (-) 918 WP_261884860.1 ABC transporter ATP-binding protein -
  OCV12_RS13330 - 3064146..3065777 (-) 1632 WP_261885961.1 SulP family inorganic anion transporter -
  OCV12_RS13335 can 3066064..3066732 (+) 669 WP_017633236.1 carbonate dehydratase -
  OCV12_RS13340 hpt 3066808..3067338 (-) 531 WP_017633235.1 hypoxanthine phosphoribosyltransferase -
  OCV12_RS13345 opaR 3067676..3068281 (+) 606 WP_048664508.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OCV12_RS13350 lpdA 3068943..3070373 (-) 1431 WP_017630530.1 dihydrolipoyl dehydrogenase -
  OCV12_RS13355 aceF 3070615..3072507 (-) 1893 WP_261884861.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23209.44 Da        Isoelectric Point: 6.0748

>NTDB_id=92267 OCV12_RS13345 WP_048664508.1 3067676..3068281(+) (opaR) [Vibrio pomeroyi strain LMG 20537]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKENLHNIATEMVTLVAQDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVETPEELSSLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=92267 OCV12_RS13345 WP_048664508.1 3067676..3068281(+) (opaR) [Vibrio pomeroyi strain LMG 20537]
ATGGACTCAATCTCTAAGAGACCTAGAACTAGGCTTTCACCCCTAAAAAGAAAACTTCAATTGATGGAAATCGCACTTGA
AGTGTTCTCTCGCCGTGGCATTGGCCGTGGTGGACACGCAGACATTGCAGATATTGCTCAGGTGTCTGTAGCAACCGTAT
TTAACTACTTCCCAACCCGTGAAGATCTGGTTGATGAAGTACTGAATCACGTCGTACGCCAATTCTCTAACTTCCTTTCA
GACAATATCGACTTAGATATTCACGCAAAAGAAAACCTACATAATATTGCGACTGAAATGGTGACGTTAGTGGCTCAAGA
TAGCCATTGGTTGAACGTATGGTTCGAATGGAGCGCATCAACTCGTGATGAAGTATGGCCTCTATTCGTAACCACTAACC
GCACTAACCAAATGTTAGTACAGAACATGTTTAGCAAAGCGATTGAACGCGGCGAAGTTTGCGACGATCACGATCCTAAG
CATCTAGCGAACCTATTCCACGGCATCTGCTACTCGCTATTCATTCAAGCGAAACGTGTAGAAACGCCAGAAGAGCTTTC
AAGCTTAACGGATAGCTACCTAAATATGCTGTGCATCTATAAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7JXS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

83

99.502

0.826
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726

Multiple sequence alignment