Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   VRC64_RS15435 Genome accession   NZ_CP142178
Coordinates   3451896..3454121 (-) Length   741 a.a.
NCBI ID   WP_262377504.1    Uniprot ID   -
Organism   Pseudomonas poae strain P_poae_Z9_4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3446896..3459121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRC64_RS15400 (VRC64_15400) murB 3447265..3448284 (-) 1020 WP_338507739.1 UDP-N-acetylmuramate dehydrogenase -
  VRC64_RS15405 (VRC64_15405) - 3448281..3448745 (-) 465 WP_169895495.1 low molecular weight protein-tyrosine-phosphatase -
  VRC64_RS15410 (VRC64_15410) kdsB 3448745..3449509 (-) 765 WP_003232162.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VRC64_RS15415 (VRC64_15415) - 3449506..3449691 (-) 186 WP_003174668.1 Trm112 family protein -
  VRC64_RS15420 (VRC64_15420) lpxK 3449716..3450726 (-) 1011 WP_169895497.1 tetraacyldisaccharide 4'-kinase -
  VRC64_RS15425 (VRC64_15425) - 3450726..3451154 (-) 429 WP_003232159.1 biopolymer transporter ExbD -
  VRC64_RS15430 (VRC64_15430) exbB 3451151..3451786 (-) 636 WP_015372391.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VRC64_RS15435 (VRC64_15435) comA 3451896..3454121 (-) 2226 WP_262377504.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VRC64_RS15440 (VRC64_15440) - 3454257..3454772 (+) 516 WP_015372393.1 DUF2062 domain-containing protein -
  VRC64_RS15445 (VRC64_15445) - 3454908..3457661 (+) 2754 WP_015372394.1 response regulator -
  VRC64_RS15450 (VRC64_15450) - 3457743..3458183 (+) 441 WP_003232149.1 hypothetical protein -
  VRC64_RS15455 (VRC64_15455) - 3458180..3458581 (+) 402 WP_003232146.1 META domain-containing protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80274.08 Da        Isoelectric Point: 10.5498

>NTDB_id=922669 VRC64_RS15435 WP_262377504.1 3451896..3454121(-) (comA) [Pseudomonas poae strain P_poae_Z9_4]
MKTGMFALALGLLALRFLPALPATGWLLAMSVLALMLLPFRTFALAFFLFGVSWACISAQWALDDRLTSALDGQTRWLEG
RVVGLPQQTSSGVRFELADSRSRNARLPRRIRVSWHGGPAVHSGERWRLAVTLKRPSGLLNVHGFDHEAWLLAQRIGATG
TVKDGERLTPARNAWRDALRQRLMAVDAQGREAGLAALVLGDGSGLADEDWQVLQDTGTVHLLVISGQHVGLLAGLIYGL
IALLARYGCWPATWPWLPWACGLAFVAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLALNGVLVLEPL
ASLQPGFWLSFGAVAVLILAFGGRLGPWSLWQAWTRPQWLIAIGLFPLLLILGLPISLSAPLANLIAVPWISLVVLPLAL
LGTFLLAVPLVGEVVLWLAGGALDLLFQGLALLAGYLPAWIPAEVSLGYWLVSLAGAVIVLLPGGVPFRLLGWPMLLLAV
VPPREPVPHGRAEVLQLDVGQGQAIVLRTRHHTLLYDAGPRSRATDLGARVVLPSLKKLGIASLDLMLISHADADHAGGA
AAVVRGLPVKRVVGGETDGLPGFLGTQPCLSGERWEWDGVSFELWQWPGAVDGNPKSCVLQVQANGERLLLTGDIDRAAE
RALLDSPLAQRTDWLQVPHHGSRSSSSRPFVQQLAPTSVLISRGRGNAFGHPHAQVMERYRALGSRVYDSAEHGAVRLQL
GAFQPAQVARAQRRFWREPLR

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=922669 VRC64_RS15435 WP_262377504.1 3451896..3454121(-) (comA) [Pseudomonas poae strain P_poae_Z9_4]
ATGAAGACAGGGATGTTCGCCTTGGCGCTGGGGTTGCTGGCCCTGCGTTTTCTACCGGCATTGCCGGCGACGGGATGGCT
GCTGGCCATGTCGGTATTGGCCTTGATGCTGTTGCCGTTTCGCACCTTCGCGCTGGCCTTTTTTCTGTTCGGTGTGAGTT
GGGCGTGCATCAGCGCGCAATGGGCGTTGGATGACCGTTTAACCTCAGCCCTGGACGGCCAGACACGCTGGCTGGAGGGA
CGGGTGGTCGGGTTGCCACAGCAAACATCCAGCGGCGTGCGCTTCGAGCTGGCCGACAGCCGGTCACGCAATGCCCGTTT
GCCCAGGCGCATCCGGGTGTCCTGGCATGGTGGACCTGCGGTGCATAGCGGCGAGCGCTGGCGGTTGGCCGTGACCCTGA
AGCGACCGTCCGGGCTGCTCAACGTTCATGGGTTCGATCACGAAGCCTGGCTGTTGGCGCAGCGTATCGGCGCGACCGGT
ACGGTAAAGGACGGCGAGCGCCTGACGCCGGCCCGCAACGCCTGGCGCGATGCGCTGCGCCAGCGCCTGATGGCGGTGGA
TGCCCAGGGCCGCGAAGCGGGATTGGCCGCGCTGGTGCTGGGTGACGGCTCCGGGCTGGCGGACGAAGACTGGCAAGTGT
TGCAGGACACCGGCACCGTGCACCTGCTGGTGATCTCCGGCCAGCACGTAGGCTTGTTGGCGGGGTTGATCTATGGGTTG
ATCGCGTTGCTGGCGCGTTATGGTTGCTGGCCCGCCACCTGGCCGTGGTTGCCCTGGGCCTGTGGGCTGGCGTTTGTTGC
AGCACTGGGTTACGGCCTGCTGGCAGGGTTCGGCGTGCCAGTGCAGCGGGCCTGCGTCATGGTGGGCCTGGTGTTGCTGT
GGCGCTTGCGCTTTCGCCATCTGGGTGCCTGGTGGCCGTTGCTGCTGGCACTCAACGGGGTGCTGGTGCTGGAGCCGTTG
GCCAGTCTGCAGCCCGGATTCTGGTTATCGTTCGGTGCCGTTGCCGTTTTGATACTGGCCTTTGGCGGACGATTGGGCCC
CTGGAGCCTTTGGCAGGCCTGGACGCGCCCGCAGTGGTTGATCGCCATCGGTCTTTTCCCCTTGTTGTTGATACTGGGTT
TGCCGATCAGCCTGAGTGCTCCCTTGGCCAATCTGATTGCTGTTCCGTGGATCAGTCTTGTGGTGTTGCCGTTGGCATTG
CTGGGAACTTTCCTGCTGGCGGTGCCGTTGGTGGGGGAGGTCGTGCTGTGGTTGGCGGGTGGCGCATTGGACCTGTTGTT
CCAGGGTCTTGCCTTGCTGGCCGGGTACCTGCCGGCGTGGATACCGGCTGAAGTGTCTTTGGGGTACTGGCTGGTGAGTC
TGGCCGGCGCGGTGATCGTGCTGCTGCCCGGCGGCGTGCCTTTTCGGCTGTTGGGCTGGCCGATGCTGTTGCTGGCGGTG
GTTCCACCGCGCGAGCCGGTGCCCCATGGACGGGCCGAGGTTTTGCAGCTGGATGTTGGGCAGGGGCAGGCGATTGTCCT
GCGTACCCGTCATCACACCCTGCTTTACGATGCCGGCCCCCGTTCGCGGGCCACAGACCTGGGCGCGCGGGTGGTGTTGC
CGTCGCTGAAAAAACTCGGTATCGCGTCACTGGATTTGATGCTGATCAGCCACGCCGATGCCGACCATGCCGGCGGGGCG
GCCGCAGTGGTGCGAGGGCTGCCGGTCAAGCGCGTGGTGGGCGGTGAAACCGACGGCCTGCCCGGGTTTCTCGGCACTCA
ACCGTGTCTCAGTGGCGAACGCTGGGAGTGGGACGGCGTGTCATTCGAGCTGTGGCAATGGCCTGGCGCCGTCGACGGCA
ATCCGAAGTCCTGCGTGTTGCAGGTACAGGCCAACGGCGAACGGTTGCTGCTCACCGGCGATATTGATCGCGCCGCCGAG
CGTGCCTTGCTCGACTCGCCGCTGGCGCAACGCACCGACTGGCTGCAGGTCCCCCACCATGGTAGCCGCAGTTCGTCGTC
CCGGCCTTTTGTGCAGCAGTTGGCACCCACGTCGGTGCTGATCTCCCGTGGGCGTGGCAATGCATTCGGTCATCCTCATG
CCCAGGTCATGGAGCGTTACCGGGCATTGGGCAGCCGCGTGTATGACAGCGCCGAGCACGGTGCGGTGCGCCTGCAATTG
GGGGCCTTCCAGCCGGCGCAGGTTGCACGCGCGCAACGCCGGTTCTGGCGTGAACCGTTACGCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-672)

Competence protein (Competence)

(198-461)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.362

97.031

0.586
  comA Ralstonia pseudosolanacearum GMI1000

34.268

100

0.363