Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   VRB42_RS14480 Genome accession   NZ_CP142171
Coordinates   3320747..3322972 (-) Length   741 a.a.
NCBI ID   WP_338484437.1    Uniprot ID   -
Organism   Pseudomonas trivialis strain P_trivialis_B02_4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3315747..3327972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRB42_RS14445 (VRB42_14445) murB 3316131..3317150 (-) 1020 WP_338477726.1 UDP-N-acetylmuramate dehydrogenase -
  VRB42_RS14450 (VRB42_14450) - 3317147..3317611 (-) 465 WP_209982771.1 low molecular weight protein-tyrosine-phosphatase -
  VRB42_RS14455 (VRB42_14455) kdsB 3317611..3318375 (-) 765 WP_338477727.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VRB42_RS14460 (VRB42_14460) - 3318372..3318557 (-) 186 WP_003174668.1 Trm112 family protein -
  VRB42_RS14465 (VRB42_14465) lpxK 3318582..3319592 (-) 1011 WP_338486039.1 tetraacyldisaccharide 4'-kinase -
  VRB42_RS14470 (VRB42_14470) - 3319592..3320020 (-) 429 WP_209982774.1 biopolymer transporter ExbD -
  VRB42_RS14475 (VRB42_14475) exbB 3320017..3320652 (-) 636 WP_015372391.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VRB42_RS14480 (VRB42_14480) comA 3320747..3322972 (-) 2226 WP_338484437.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VRB42_RS14485 (VRB42_14485) - 3323108..3323623 (+) 516 WP_209982778.1 DUF2062 domain-containing protein -
  VRB42_RS14490 (VRB42_14490) - 3323759..3326512 (+) 2754 WP_338477730.1 response regulator -
  VRB42_RS14495 (VRB42_14495) - 3326594..3327034 (+) 441 WP_338477731.1 hypothetical protein -
  VRB42_RS14500 (VRB42_14500) - 3327031..3327432 (+) 402 WP_338493663.1 META domain-containing protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80636.69 Da        Isoelectric Point: 11.0276

>NTDB_id=922505 VRB42_RS14480 WP_338484437.1 3320747..3322972(-) (comA) [Pseudomonas trivialis strain P_trivialis_B02_4]
MKTGMFALALGLLTLRVLPALPATGWLLAMLVLALMLLPFRTFALAFFLFGLSWACISAQWALNDRLTPALDGQTRWLEG
RVVGLPQQTSTGVRFELADSRSRHARLPRRIRVSWHGGPTVRSGERWRLAVTLKRPSGLLNFHGFDHEAWLLARRIGATG
TVKDGERLTLARNAWRDTLRQRLMTVDAQGREAGLAALVLGDGSGLADEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IALLARYGCWPATWPWLPWACGLAFVAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLALNGVLVLEPL
ASLQPGFWLSFGAVAVLILAFGGRLGPWRLWQGWTRAQWLIAIGLFPLLLMLDLPISLSAPLANLVAVPWISLVVLPLAL
LGTALLTVPLVGEGLLWLAGGALDLLFQGLALLAAHLSAWIPAEVPLGFWLVSLVGALIVLLPGGVPFRLLGWPMLLLAV
FPPRELVPHGRVDVVQLDVGQGQAIILRTRYHTVLYDAGPRSRAADLGARVVLPSLKKLGIASLDLMLISHADADHAGGA
AAVARGLPVRRVVGGETDGLPEFLGTQPCISGERWQWDGVSFELWQWPGAVDGNPKSCVLQVQVNGERLLLTGDIDRAAE
RALLDSPLALRTDWLQAPHHGSRSSSSRPFVQQLAPTSVLISRGRGNAFGHPHAQVLERYRAVGSRVYDSAEQGAVRLQL
GAFQPATVARAQRRFWREPLR

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=922505 VRB42_RS14480 WP_338484437.1 3320747..3322972(-) (comA) [Pseudomonas trivialis strain P_trivialis_B02_4]
ATGAAGACAGGGATGTTTGCATTGGCGCTGGGGTTGCTGACTCTGCGTGTCTTACCCGCATTGCCAGCGACGGGATGGCT
GCTGGCCATGCTGGTGCTGGCCTTGATGCTGTTGCCGTTTCGCACCTTCGCGCTGGCCTTTTTCCTGTTCGGTTTGAGCT
GGGCGTGCATCAGTGCGCAGTGGGCGCTGAATGACCGATTGACCCCCGCACTGGACGGCCAGACGCGTTGGCTGGAGGGA
CGGGTGGTCGGGTTACCGCAGCAGACATCCACTGGCGTGCGCTTCGAACTGGCCGACAGCCGGTCACGCCACGCCCGCTT
GCCCAGGCGCATCCGGGTGTCCTGGCACGGCGGGCCGACGGTGCGCAGTGGCGAGCGCTGGCGGTTGGCCGTGACCCTGA
AGCGACCGTCCGGCCTGCTCAACTTTCATGGGTTCGATCACGAAGCCTGGCTGTTGGCGCGGCGCATCGGCGCGACCGGT
ACGGTAAAGGACGGCGAGCGTCTGACGCTGGCCCGCAACGCCTGGCGCGATACTCTGCGCCAACGCCTGATGACGGTGGA
TGCCCAGGGCCGCGAAGCGGGGCTCGCCGCGCTGGTGCTGGGCGACGGCTCCGGGCTGGCGGACGAAGACTGGCAAGTGC
TGCAGGACACCGGCACCGTGCACCTGCTGGTGATCTCCGGCCAGCACATTGGCCTGCTGGCGGGGCTGATCTACGGGCTG
ATCGCGTTGCTGGCGCGTTATGGTTGCTGGCCCGCCACCTGGCCGTGGTTGCCCTGGGCCTGCGGCCTGGCGTTTGTTGC
AGCGCTGGGTTACGGCTTGCTGGCGGGGTTCGGCGTGCCGGTGCAGCGGGCCTGCGTCATGGTGGGGTTGGTGCTGCTGT
GGCGGTTGCGTTTTCGCCACCTGGGTGCCTGGTGGCCGTTGCTGCTGGCACTCAACGGTGTACTGGTGCTGGAACCGCTG
GCGAGTCTGCAGCCCGGATTCTGGTTATCGTTCGGTGCGGTTGCGGTGTTGATACTGGCCTTCGGCGGGCGCTTGGGCCC
GTGGCGCCTGTGGCAGGGCTGGACGCGTGCGCAGTGGTTGATCGCCATCGGTCTTTTTCCCCTGTTGTTGATGCTTGATT
TGCCGATCAGCCTGAGTGCTCCCCTTGCCAATCTGGTCGCTGTGCCCTGGATCAGCCTGGTGGTGTTGCCGCTGGCATTG
CTGGGGACTGCCCTGCTGACGGTGCCGCTTGTAGGGGAGGGCCTGCTGTGGTTGGCGGGCGGCGCGCTGGACCTGTTGTT
CCAGGGCCTTGCGCTGCTGGCGGCGCACCTGTCTGCTTGGATACCGGCCGAAGTGCCTCTGGGGTTTTGGCTGGTGAGTC
TGGTCGGCGCGTTGATCGTGCTGCTGCCGGGCGGCGTGCCTTTTCGGCTGTTGGGTTGGCCGATGCTGTTGCTGGCGGTG
TTTCCACCGCGTGAGCTGGTGCCCCATGGGCGGGTGGACGTGGTGCAACTGGACGTCGGCCAGGGGCAGGCGATCATCCT
GCGCACCCGCTATCACACCGTGCTCTACGATGCCGGCCCGCGTTCGCGGGCCGCAGACCTGGGCGCGCGGGTGGTGTTGC
CATCGCTGAAAAAACTTGGCATCGCGTCGCTGGATTTGATGCTGATCAGCCACGCCGATGCCGATCATGCCGGCGGGGCG
GCCGCAGTGGCGCGCGGGCTGCCGGTGAGGCGTGTGGTGGGCGGTGAAACTGACGGCCTGCCCGAGTTTCTCGGCACTCA
ACCTTGTATCAGCGGCGAACGCTGGCAGTGGGACGGTGTGTCATTCGAGCTGTGGCAATGGCCCGGGGCCGTCGACGGTA
ACCCGAAATCCTGCGTGTTGCAGGTGCAGGTCAATGGCGAACGGTTGCTGCTCACCGGCGATATCGATCGTGCCGCCGAG
CGCGCGTTGCTCGACTCGCCGCTGGCGCTGCGCACCGACTGGCTGCAAGCCCCTCACCATGGCAGCCGCAGTTCGTCGTC
CCGGCCTTTTGTGCAGCAGTTGGCGCCAACGTCGGTGCTGATCTCGCGGGGGCGCGGCAATGCATTCGGCCATCCTCACG
CCCAGGTGCTGGAGCGTTACCGCGCAGTGGGCAGCCGGGTGTATGACAGCGCCGAGCAGGGTGCGGTGCGCCTGCAGTTG
GGGGCTTTCCAGCCAGCCACAGTTGCACGCGCGCAACGCCGCTTCTGGCGTGAACCGTTACGCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-670)

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.223

97.031

0.584
  comA Ralstonia pseudosolanacearum GMI1000

34.86

100

0.37