Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   VRB98_RS14345 Genome accession   NZ_CP142169
Coordinates   3321001..3323226 (-) Length   741 a.a.
NCBI ID   WP_338494634.1    Uniprot ID   -
Organism   Pseudomonas trivialis strain P_trivialis_B02_6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3316001..3328226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRB98_RS14310 (VRB98_14310) murB 3316385..3317404 (-) 1020 WP_338477726.1 UDP-N-acetylmuramate dehydrogenase -
  VRB98_RS14315 (VRB98_14315) - 3317401..3317865 (-) 465 WP_209982771.1 low molecular weight protein-tyrosine-phosphatase -
  VRB98_RS14320 (VRB98_14320) kdsB 3317865..3318629 (-) 765 WP_338477727.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VRB98_RS14325 (VRB98_14325) - 3318626..3318811 (-) 186 WP_003174668.1 Trm112 family protein -
  VRB98_RS14330 (VRB98_14330) lpxK 3318836..3319846 (-) 1011 WP_338477728.1 tetraacyldisaccharide 4'-kinase -
  VRB98_RS14335 (VRB98_14335) - 3319846..3320274 (-) 429 WP_209982774.1 biopolymer transporter ExbD -
  VRB98_RS14340 (VRB98_14340) exbB 3320271..3320906 (-) 636 WP_015372391.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VRB98_RS14345 (VRB98_14345) comA 3321001..3323226 (-) 2226 WP_338494634.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VRB98_RS14350 (VRB98_14350) - 3323362..3323877 (+) 516 WP_209982778.1 DUF2062 domain-containing protein -
  VRB98_RS14355 (VRB98_14355) - 3324013..3326766 (+) 2754 WP_338477730.1 response regulator -
  VRB98_RS14360 (VRB98_14360) - 3326848..3327288 (+) 441 WP_338477731.1 hypothetical protein -
  VRB98_RS14365 (VRB98_14365) - 3327285..3327686 (+) 402 WP_338493663.1 META domain-containing protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80650.71 Da        Isoelectric Point: 11.0276

>NTDB_id=922457 VRB98_RS14345 WP_338494634.1 3321001..3323226(-) (comA) [Pseudomonas trivialis strain P_trivialis_B02_6]
MKTGMFALALGLLTLRVLPALPATGWLLAMLVLALMLLPFRTFALAFFLFGLSWACISAQWALNDRLTPALDGQTRWLEG
RVVGLPQQTSTGVRFELADSRSRHARLPRRIRVSWHGGPTVRSGERWRLAVTLKRPSGLLNFHGFDHEAWLLARRIGATG
TVKDGERLTLARNAWRDTLRQRLMTVDAQGREAGLAALVLGDGSGLADEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IALLARYGCWPATWPWLPWACGLAFVAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLALNGVLVLEPL
ASLQPGFWLSFGAVAVLILAFGGRLGPWRLWQGWTRAQWLIAIGLFPLLLMLDLPISLSAPLANLVAVPWISLVVLPLAL
LGTALLTVPLVGEGLLWLAGGALDLLFQGLALLAAHLSAWIPAEVPLGFWLVSLVGALIVLLPGGVPFRLLGWPMLLLAV
FPPRELVPHGRVDVVQLDVGQGQAIILRTRYHTVLYDAGPRSRAADLGARVVLPSLKKLGIASLDLMLISHADADHAGGA
AAVARGLPVRRVVGGETDGLPEFLGTQPCISGERWQWDGVSFELWQWPGAVDGNPKSCVLQVQINGERLLLTGDIDRAAE
RALLDSPLALRTDWLQAPHHGSRSSSSRPFVQQLAPTSVLISRGRGNAFGHPHAQVLERYRAVGSRVYDSAEQGAVRLQL
GAFQPATVARAQRRFWREPLR

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=922457 VRB98_RS14345 WP_338494634.1 3321001..3323226(-) (comA) [Pseudomonas trivialis strain P_trivialis_B02_6]
ATGAAGACAGGGATGTTTGCATTGGCGCTGGGGTTGCTGACTCTGCGTGTCTTACCCGCATTGCCAGCGACGGGATGGCT
GCTGGCCATGCTGGTGCTGGCCTTGATGCTGTTGCCGTTTCGCACCTTCGCGCTGGCCTTTTTCCTGTTCGGTTTGAGCT
GGGCGTGCATCAGTGCGCAGTGGGCGCTGAATGACCGATTGACCCCCGCACTGGACGGCCAGACGCGTTGGCTGGAGGGA
CGGGTGGTCGGGTTACCGCAGCAGACATCCACTGGCGTGCGCTTCGAACTGGCCGACAGCCGGTCACGCCACGCCCGCTT
GCCCAGGCGCATCCGGGTGTCCTGGCACGGCGGGCCGACGGTGCGCAGTGGCGAGCGCTGGCGGTTGGCCGTGACCCTGA
AGCGACCGTCCGGCCTGCTCAACTTTCATGGGTTCGATCACGAAGCCTGGCTGTTGGCGCGGCGCATCGGCGCGACCGGT
ACGGTAAAGGACGGCGAGCGTCTGACGCTGGCCCGCAACGCCTGGCGCGATACTCTGCGCCAACGCCTGATGACGGTGGA
TGCCCAGGGCCGCGAAGCGGGGCTCGCCGCGCTGGTGCTGGGCGACGGCTCCGGGCTGGCGGACGAAGACTGGCAAGTGC
TGCAGGACACCGGCACCGTGCACCTGCTGGTGATCTCCGGCCAGCACATTGGCCTGCTGGCGGGGCTGATCTACGGGCTG
ATCGCGTTGCTGGCGCGTTATGGTTGCTGGCCCGCCACCTGGCCGTGGTTGCCCTGGGCCTGCGGCCTGGCGTTTGTTGC
AGCGCTGGGTTACGGCTTGCTGGCGGGGTTCGGCGTGCCGGTGCAGCGGGCCTGCGTCATGGTGGGGTTGGTGCTGCTGT
GGCGGTTGCGTTTTCGCCACCTGGGTGCCTGGTGGCCGTTGCTGCTGGCACTCAACGGTGTACTGGTGCTGGAACCGCTG
GCGAGTCTGCAGCCCGGATTCTGGTTATCGTTCGGTGCGGTTGCGGTGTTGATACTGGCCTTCGGCGGGCGCTTGGGCCC
GTGGCGCCTGTGGCAGGGCTGGACGCGTGCGCAGTGGTTGATCGCCATCGGTCTTTTTCCCCTGTTGTTGATGCTTGATT
TGCCGATCAGCCTGAGTGCTCCCCTTGCCAATCTGGTCGCTGTGCCCTGGATCAGCCTGGTGGTGTTGCCGCTGGCATTG
CTGGGGACTGCCCTGCTGACGGTGCCGCTTGTAGGGGAGGGCCTGCTGTGGTTGGCGGGCGGCGCGCTGGACCTGTTGTT
CCAGGGCCTTGCGCTGCTGGCGGCGCACCTGTCTGCTTGGATACCGGCCGAAGTGCCTCTGGGGTTTTGGCTGGTGAGTC
TGGTCGGCGCGTTGATCGTGCTGCTGCCGGGCGGCGTGCCTTTTCGGCTGTTGGGTTGGCCGATGCTGTTGCTGGCGGTG
TTTCCACCGCGTGAGCTGGTGCCCCATGGGCGGGTGGACGTGGTGCAACTGGACGTCGGCCAGGGGCAGGCGATCATCCT
GCGCACCCGCTATCACACCGTGCTCTACGATGCCGGCCCGCGTTCGCGGGCCGCAGACCTGGGCGCGCGGGTGGTGTTGC
CATCGCTGAAAAAACTTGGCATCGCGTCGCTGGATTTGATGCTGATCAGCCACGCCGATGCCGATCATGCCGGCGGGGCG
GCCGCAGTGGCGCGCGGGCTGCCGGTGAGGCGTGTGGTGGGCGGTGAAACTGACGGCCTGCCCGAGTTTCTCGGCACTCA
ACCTTGTATCAGCGGCGAACGCTGGCAGTGGGACGGTGTGTCATTCGAGCTGTGGCAATGGCCCGGGGCCGTCGACGGTA
ACCCGAAATCCTGCGTGTTGCAGGTGCAGATCAATGGCGAACGGTTGCTGCTCACCGGCGATATCGATCGTGCCGCCGAG
CGCGCGTTGCTCGACTCGCCGCTGGCGCTGCGCACCGACTGGCTGCAAGCCCCTCACCATGGCAGCCGCAGTTCGTCGTC
CCGGCCTTTTGTGCAGCAGTTGGCGCCAACGTCGGTGCTGATCTCGCGGGGGCGCGGCAATGCATTCGGCCATCCTCACG
CCCAGGTGCTGGAGCGTTACCGCGCAGTGGGCAGCCGGGTGTATGACAGCGCCGAGCAGGGTGCGGTGCGCCTGCAGTTG
GGGGCTTTCCAGCCAGCCACAGTTGCACGCGCGCAACGCCGCTTCTGGCGTGAACCGTTACGCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-670)

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.223

97.031

0.584
  comA Ralstonia pseudosolanacearum GMI1000

34.86

100

0.37