Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   VRB06_RS22680 Genome accession   NZ_CP142166
Coordinates   5103439..5103846 (-) Length   135 a.a.
NCBI ID   WP_003234584.1    Uniprot ID   A0AAP2WFC8
Organism   Pseudomonas trivialis strain P_trivialis_B02_9     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5098439..5108846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRB06_RS22665 (VRB06_22665) - 5100443..5102494 (-) 2052 WP_060548141.1 methyl-accepting chemotaxis protein -
  VRB06_RS22670 (VRB06_22670) - 5102491..5103015 (-) 525 WP_057006531.1 chemotaxis protein CheW -
  VRB06_RS22675 (VRB06_22675) pilH 5103028..5103393 (-) 366 WP_003234583.1 twitching motility response regulator PilH -
  VRB06_RS22680 (VRB06_22680) pilG 5103439..5103846 (-) 408 WP_003234584.1 twitching motility response regulator PilG Regulator
  VRB06_RS22685 (VRB06_22685) gshB 5104084..5105037 (+) 954 WP_338483643.1 glutathione synthase -
  VRB06_RS22690 (VRB06_22690) - 5105114..5106019 (+) 906 WP_338478834.1 energy transducer TonB -
  VRB06_RS22695 (VRB06_22695) - 5106087..5106656 (+) 570 WP_209990541.1 YqgE/AlgH family protein -
  VRB06_RS22700 (VRB06_22700) ruvX 5106656..5107093 (+) 438 WP_003234589.1 Holliday junction resolvase RuvX -
  VRB06_RS22705 (VRB06_22705) pyrR 5107167..5107673 (+) 507 WP_338478835.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  VRB06_RS22710 (VRB06_22710) - 5107698..5108702 (+) 1005 WP_338510779.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14830.37 Da        Isoelectric Point: 7.3533

>NTDB_id=922394 VRB06_RS22680 WP_003234584.1 5103439..5103846(-) (pilG) [Pseudomonas trivialis strain P_trivialis_B02_9]
MEQHSNALRVMVIDDSKTIRRTAETLLKNVGCDVITAIDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
AIPVIMLSSKDGLFDKAKGRIVGVDQFLTKPFSKEELLGAIKACVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=922394 VRB06_RS22680 WP_003234584.1 5103439..5103846(-) (pilG) [Pseudomonas trivialis strain P_trivialis_B02_9]
ATGGAACAGCATTCCAACGCCTTGAGAGTGATGGTGATCGACGATTCGAAGACGATCCGCCGCACCGCCGAAACCCTGTT
GAAGAACGTGGGCTGCGACGTGATCACGGCCATCGACGGTTTCGATGCCCTGGCCCGGATTGTCGATCATCACCCGCACA
TTATTTTCGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACTTGCGCGCTGGTGAAGAACAACCCGGCGTTCAAG
GCGATCCCCGTGATCATGCTGTCGTCCAAGGACGGTCTGTTCGACAAGGCCAAGGGGCGCATCGTGGGGGTCGATCAGTT
TTTGACCAAGCCGTTCAGCAAGGAAGAACTGCTGGGCGCGATCAAGGCCTGCGTGCCCGGGTTCGCCGCAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

71.311

90.37

0.644
  vicR Streptococcus mutans UA159

38.889

93.333

0.363