Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   VRB78_RS23280 Genome accession   NZ_CP142164
Coordinates   5171245..5171652 (-) Length   135 a.a.
NCBI ID   WP_003234584.1    Uniprot ID   A0AAP2WFC8
Organism   Pseudomonas trivialis strain P_trivialis_B08_1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5166245..5176652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRB78_RS23265 (VRB78_23265) - 5168249..5170300 (-) 2052 WP_338488685.1 methyl-accepting chemotaxis protein -
  VRB78_RS23270 (VRB78_23270) - 5170297..5170821 (-) 525 WP_338488687.1 chemotaxis protein CheW -
  VRB78_RS23275 (VRB78_23275) pilH 5170834..5171199 (-) 366 WP_003234583.1 twitching motility response regulator PilH -
  VRB78_RS23280 (VRB78_23280) pilG 5171245..5171652 (-) 408 WP_003234584.1 twitching motility response regulator PilG Regulator
  VRB78_RS23285 (VRB78_23285) gshB 5171890..5172843 (+) 954 WP_057006529.1 glutathione synthase -
  VRB78_RS23290 (VRB78_23290) - 5172919..5173824 (+) 906 WP_338488690.1 energy transducer TonB -
  VRB78_RS23295 (VRB78_23295) - 5173892..5174461 (+) 570 WP_209990541.1 YqgE/AlgH family protein -
  VRB78_RS23300 (VRB78_23300) ruvX 5174461..5174898 (+) 438 WP_338488692.1 Holliday junction resolvase RuvX -
  VRB78_RS23305 (VRB78_23305) pyrR 5174972..5175478 (+) 507 WP_338478835.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  VRB78_RS23310 (VRB78_23310) - 5175503..5176507 (+) 1005 WP_338488694.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14830.37 Da        Isoelectric Point: 7.3533

>NTDB_id=922346 VRB78_RS23280 WP_003234584.1 5171245..5171652(-) (pilG) [Pseudomonas trivialis strain P_trivialis_B08_1]
MEQHSNALRVMVIDDSKTIRRTAETLLKNVGCDVITAIDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
AIPVIMLSSKDGLFDKAKGRIVGVDQFLTKPFSKEELLGAIKACVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=922346 VRB78_RS23280 WP_003234584.1 5171245..5171652(-) (pilG) [Pseudomonas trivialis strain P_trivialis_B08_1]
ATGGAACAGCATTCCAACGCCTTGAGAGTGATGGTGATCGACGATTCGAAGACGATCCGCCGCACCGCCGAAACCCTGTT
GAAGAACGTGGGCTGCGACGTGATCACGGCCATCGACGGTTTCGATGCCCTGGCCCGGATTGTCGATCATCACCCGCACA
TTATTTTCGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACTTGCGCGCTGGTGAAGAACAACCCGGCGTTCAAG
GCGATCCCCGTGATCATGCTGTCGTCCAAGGACGGTCTGTTCGACAAGGCCAAGGGGCGCATCGTGGGGGTCGATCAGTT
TTTGACCAAGCCGTTCAGCAAGGAAGAACTGCTGGGCGCGATCAAGGCCTGCGTGCCCGGGTTCGCCGCAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

71.311

90.37

0.644
  vicR Streptococcus mutans UA159

38.889

93.333

0.363