Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   VRC18_RS23305 Genome accession   NZ_CP142162
Coordinates   5171334..5171741 (-) Length   135 a.a.
NCBI ID   WP_003234584.1    Uniprot ID   A0AAP2WFC8
Organism   Pseudomonas trivialis strain P_trivialis_B08_4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5166334..5176741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRC18_RS23290 (VRC18_23290) - 5168338..5170389 (-) 2052 WP_338488685.1 methyl-accepting chemotaxis protein -
  VRC18_RS23295 (VRC18_23295) - 5170386..5170910 (-) 525 WP_338488687.1 chemotaxis protein CheW -
  VRC18_RS23300 (VRC18_23300) pilH 5170923..5171288 (-) 366 WP_003234583.1 twitching motility response regulator PilH -
  VRC18_RS23305 (VRC18_23305) pilG 5171334..5171741 (-) 408 WP_003234584.1 twitching motility response regulator PilG Regulator
  VRC18_RS23310 (VRC18_23310) gshB 5171979..5172932 (+) 954 WP_057006529.1 glutathione synthase -
  VRC18_RS23315 (VRC18_23315) - 5173008..5173913 (+) 906 WP_338488690.1 energy transducer TonB -
  VRC18_RS23320 (VRC18_23320) - 5173981..5174550 (+) 570 WP_209990541.1 YqgE/AlgH family protein -
  VRC18_RS23325 (VRC18_23325) ruvX 5174550..5174987 (+) 438 WP_338488692.1 Holliday junction resolvase RuvX -
  VRC18_RS23330 (VRC18_23330) pyrR 5175061..5175567 (+) 507 WP_338478835.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  VRC18_RS23335 (VRC18_23335) - 5175592..5176596 (+) 1005 WP_338488694.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14830.37 Da        Isoelectric Point: 7.3533

>NTDB_id=922296 VRC18_RS23305 WP_003234584.1 5171334..5171741(-) (pilG) [Pseudomonas trivialis strain P_trivialis_B08_4]
MEQHSNALRVMVIDDSKTIRRTAETLLKNVGCDVITAIDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
AIPVIMLSSKDGLFDKAKGRIVGVDQFLTKPFSKEELLGAIKACVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=922296 VRC18_RS23305 WP_003234584.1 5171334..5171741(-) (pilG) [Pseudomonas trivialis strain P_trivialis_B08_4]
ATGGAACAGCATTCCAACGCCTTGAGAGTGATGGTGATCGACGATTCGAAGACGATCCGCCGCACCGCCGAAACCCTGTT
GAAGAACGTGGGCTGCGACGTGATCACGGCCATCGACGGTTTCGATGCCCTGGCCCGGATTGTCGATCATCACCCGCACA
TTATTTTCGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACTTGCGCGCTGGTGAAGAACAACCCGGCGTTCAAG
GCGATCCCCGTGATCATGCTGTCGTCCAAGGACGGTCTGTTCGACAAGGCCAAGGGGCGCATCGTGGGGGTCGATCAGTT
TTTGACCAAGCCGTTCAGCAAGGAAGAACTGCTGGGCGCGATCAAGGCCTGCGTGCCCGGGTTCGCCGCAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

71.311

90.37

0.644
  vicR Streptococcus mutans UA159

38.889

93.333

0.363