Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   vsple_RS11470 Genome accession   NZ_AP025503
Coordinates   2638576..2639181 (+) Length   201 a.a.
NCBI ID   WP_255229942.1    Uniprot ID   -
Organism   Vibrio pelagius strain ATCC 25916     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2633576..2644181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  vsple_RS11450 - 2633914..2634831 (-) 918 WP_255229946.1 ABC transporter ATP-binding protein -
  vsple_RS11455 - 2635055..2636725 (-) 1671 WP_261882070.1 SulP family inorganic anion transporter -
  vsple_RS11460 can 2636969..2637637 (+) 669 WP_255229944.1 carbonate dehydratase -
  vsple_RS11465 hpt 2637708..2638238 (-) 531 WP_255229943.1 hypoxanthine phosphoribosyltransferase -
  vsple_RS11470 opaR 2638576..2639181 (+) 606 WP_255229942.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  vsple_RS11475 lpdA 2639639..2641069 (-) 1431 WP_032550144.1 dihydrolipoyl dehydrogenase -
  vsple_RS11480 aceF 2641310..2643217 (-) 1908 WP_261882071.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23323.65 Da        Isoelectric Point: 6.4903

>NTDB_id=92228 vsple_RS11470 WP_255229942.1 2638576..2639181(+) (opaR) [Vibrio pelagius strain ATCC 25916]
MDSISKRPRTRLSPLKRKLQLMEIALEVFARRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKQNLTNITNEMLTLVEQDCHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFVKAIERGEVCDQHEPK
HLANLFHGICYSLFIQAKRANSTEELHSLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=92228 vsple_RS11470 WP_255229942.1 2638576..2639181(+) (opaR) [Vibrio pelagius strain ATCC 25916]
ATGGACTCAATATCTAAGAGACCTAGAACTAGGCTTTCACCCCTAAAAAGAAAACTTCAATTGATGGAGATTGCACTTGA
AGTATTCGCCCGCCGCGGCATTGGCCGAGGTGGACACGCAGATATCGCAGACATTGCTCAAGTATCTGTCGCAACTGTAT
TTAACTACTTCCCAACGCGTGAAGATCTGGTCGACGAGGTTCTAAACCATGTTGTTCGTCAGTTCTCAAACTTTCTTTCA
GACAATATTGACCTCGATATTCACGCTAAGCAGAACTTAACAAACATCACCAATGAGATGCTTACTCTTGTTGAGCAAGA
TTGTCACTGGCTCAATGTTTGGTTCGAGTGGAGCGCGTCAACTCGTGATGAAGTATGGCCACTGTTCGTAACAACCAACC
GCACTAACCAGATGCTGGTACAGAACATGTTTGTTAAAGCGATCGAGCGTGGTGAAGTTTGCGACCAACATGAACCGAAA
CACTTGGCGAACCTATTCCACGGTATTTGCTACTCGCTGTTCATCCAAGCGAAGCGTGCAAACTCAACTGAAGAATTGCA
CTCATTGACTGACAGCTACTTAAATATGCTGTGTATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

84.5

99.502

0.841
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726

Multiple sequence alignment