Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   vsple_RS09325 Genome accession   NZ_AP025503
Coordinates   2159749..2161149 (-) Length   466 a.a.
NCBI ID   WP_255230334.1    Uniprot ID   -
Organism   Vibrio pelagius strain ATCC 25916     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2154749..2166149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  vsple_RS09290 moaE 2155333..2155788 (-) 456 WP_261881841.1 molybdopterin synthase catalytic subunit MoaE -
  vsple_RS09295 moaD 2155791..2156036 (-) 246 WP_261881842.1 molybdopterin synthase sulfur carrier subunit -
  vsple_RS09300 moaC 2156033..2156512 (-) 480 WP_255230339.1 cyclic pyranopterin monophosphate synthase MoaC -
  vsple_RS09305 moaB 2156524..2157036 (-) 513 WP_150868996.1 molybdenum cofactor biosynthesis protein B -
  vsple_RS09310 moaA 2157126..2158115 (-) 990 WP_255230337.1 GTP 3',8-cyclase MoaA -
  vsple_RS09315 - 2158453..2159340 (+) 888 WP_261881843.1 YvcK family protein -
  vsple_RS09320 luxU 2159394..2159729 (-) 336 WP_261881844.1 quorum-sensing phosphorelay protein LuxU -
  vsple_RS09325 luxO 2159749..2161149 (-) 1401 WP_255230334.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  vsple_RS09330 uvrB 2161436..2163466 (-) 2031 WP_032551998.1 excinuclease ABC subunit UvrB -
  vsple_RS09340 rsxA 2164587..2165165 (+) 579 WP_032551997.1 electron transport complex subunit RsxA -
  vsple_RS09345 rsxB 2165168..2165752 (+) 585 WP_255230331.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52029.54 Da        Isoelectric Point: 5.9775

>NTDB_id=92226 vsple_RS09325 WP_255230334.1 2159749..2161149(-) (luxO) [Vibrio pelagius strain ATCC 25916]
MQSKTFDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGKEAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQNF
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSAEHPGSQNYQGFIGSSLTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFSQEVIDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPLENSL
RLKEKQSEDISVKDIFPLWLTEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQAWNAKQSSSE

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=92226 vsple_RS09325 WP_255230334.1 2159749..2161149(-) (luxO) [Vibrio pelagius strain ATCC 25916]
ATGCAATCAAAAACATTTGATAATAAATCGAAATATTTGTTAATGGTAGAGGATACGGCGTCCGTAGCGGCGTTGTATCG
ATCTTACCTGACCCCTTTAGAGATAGATATCAATATTGTGGGTACAGGCAAAGAGGCAATAGAGAGCCTTAACCATAGAA
TCCCGGACCTCATTCTCCTTGATCTTCGTCTTCCAGATATGACGGGGATGGATGTTCTATTTGCGGTAAAGCAAAACTTC
CCTGAAGTTCCGGTCATTTTCATGACAGCCCACGGCTCGATTGATACCGCCGTTGAAGCGATGCGTCACGGATCTCAAGA
CTTTTTGATCAAGCCATGTGAGGCAGATCGTCTACGAATTACAGTCAACAATGCCATTCGTAAAGCAACTAAGCTGAAGA
ATAGCGCTGAACACCCGGGCAGCCAGAACTATCAAGGTTTCATCGGCAGTAGCTTAACCATGCAGCAGGTGTATCGCACG
ATCGACTCCGCGGCTTCGAGTAAGGCGAGCATTTTTATCACCGGTGAGAGTGGTACAGGTAAAGAAGTGTGTGCTGAAGC
TATTCATGCTGCAAGTAAACGTGGGGACAAACCGTTTATTGCCATTAACTGTGCTGCTATTCCAAAAGATTTGATTGAGA
GTGAGTTGTTTGGTCACGTTAAAGGTGCGTTCACGGGCGCAGCTACCGATCGACAAGGTGCAGCCGAGCTAGCCGATGGA
GGAACTTTGTTCCTTGATGAGTTGTGTGAAATGGATCTTGAGCTACAAACCAAATTGCTTCGTTTTATCCAAACAGGTAC
TTTCCAAAAAGTAGGCTCTTCAAAAATGAAGAGTGTGGATGTGCGTTTTGTTTGTGCGACCAACCGAGACCCTTGGAAAG
AGGTTCAAGAAGGTCGTTTCCGCGAAGATTTGTATTATCGCTTGTACGTTATCCCATTGCATCTTCCACCCTTGCGCGAA
CGCGGTGAAGACGTTATTGAGATTGCTTATTCGTTGTTGGGCTATATGTCGGTGGAAGAGGGCAAAGCGTTTGTTCGTTT
CTCTCAGGAAGTGATCGATCGATTCAACCAGTACGAGTGGCCCGGGAATGTACGTCAATTGCAAAACGTTTTACGAAATG
TCGTAGTACTAAATAACGGCAAAGAGATCACCTTGAATATGTTGCCACCCCCTCTTAACCAACCGTTAGAAAATAGCCTG
CGATTGAAAGAGAAACAGAGCGAAGACATCTCGGTTAAGGACATTTTCCCACTGTGGTTGACCGAAAAAACAGCGATAGA
ACAGGCAATTAAAGCATGCGATGGTAATATCCCAAGGGCAGCAGGCTTCTTAGATGTTAGCCCATCGACCATTTATCGAA
AACTGCAGGCATGGAACGCAAAACAGTCGTCCTCAGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

85.268

96.137

0.82

Multiple sequence alignment