Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   vsple_RS06645 Genome accession   NZ_AP025503
Coordinates   1529728..1531215 (-) Length   495 a.a.
NCBI ID   WP_261883056.1    Uniprot ID   -
Organism   Vibrio pelagius strain ATCC 25916     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1524728..1536215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  vsple_RS22005 - 1525222..1525989 (-) 768 Protein_1243 lipopolysaccharide biosynthesis protein -
  vsple_RS06630 - 1525982..1527211 (-) 1230 WP_261883053.1 glycosyltransferase family 4 protein -
  vsple_RS06635 - 1527235..1528407 (-) 1173 WP_261883054.1 glycosyltransferase -
  vsple_RS06640 - 1528665..1529747 (-) 1083 WP_261883055.1 glycosyltransferase family 4 protein -
  vsple_RS06645 luxO 1529728..1531215 (-) 1488 WP_261883056.1 sigma-54-dependent transcriptional regulator Regulator
  vsple_RS06650 - 1531313..1531687 (-) 375 WP_261883057.1 Hpt domain-containing protein -
  vsple_RS06655 - 1531924..1533150 (-) 1227 WP_261883058.1 quaternary amine ABC transporter ATP-binding protein -
  vsple_RS06660 - 1533143..1534042 (-) 900 WP_261883059.1 ABC transporter permease -
  vsple_RS06665 - 1534164..1535153 (-) 990 WP_255230772.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 55140.19 Da        Isoelectric Point: 5.8848

>NTDB_id=92222 vsple_RS06645 WP_261883056.1 1529728..1531215(-) (luxO) [Vibrio pelagius strain ATCC 25916]
MRPKVLLVEDSTSLAVLYKQYVKDEPYDIFHVETGAEAKTFIERHTPQLVILDLKLPDMSGEEVLDWITENEVPTAVIIA
TAHGSVDIAVSLIQRGAEDFLEKPIQAERLKTSVQLHLKRAKLENLVENIKSKFDRESFQGFIGSCLPMQAVYKTIDSVA
PTTASVFINGESGTGKEVCAEAIHKESQRRDKPFVAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAAMQAHGGTLFL
DELCEMELEMQKKLLRFLQTGTFTPLGATREVKVDVRIICATNRDPLLEVEEGRFREDLYYRVHVVPIEMPPLRERGSDI
VTLCKHFLKIYAKQDGKKFKSIDKEAQVLLKNYPWPGNVRQLQNIIRNIVVLNNETNVTKEMIPAPINGAGGRSKVVTPT
KRAEPVQEAVVETVSKPAPLTPDQIEAASESNGPALTNGDGSIRPMWKIEREAIQNAINHCDGNVLNAAVLLELSPSTVY
RKKQAWEAEDEYNQA

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=92222 vsple_RS06645 WP_261883056.1 1529728..1531215(-) (luxO) [Vibrio pelagius strain ATCC 25916]
ATGCGCCCTAAAGTATTGTTAGTTGAAGACTCCACTTCATTAGCTGTTTTATACAAACAGTATGTAAAAGATGAACCCTA
CGACATTTTTCACGTCGAAACGGGAGCAGAAGCCAAAACCTTCATTGAGCGCCACACGCCGCAACTGGTTATCCTTGACC
TGAAGTTACCTGACATGTCGGGTGAAGAAGTATTAGATTGGATAACAGAAAATGAAGTTCCGACGGCTGTGATTATTGCT
ACCGCTCATGGCTCAGTCGACATTGCAGTTAGCCTTATTCAGCGTGGTGCAGAAGACTTTCTCGAAAAACCGATTCAAGC
TGAACGCCTAAAAACCTCAGTTCAGCTGCACCTTAAACGCGCCAAGCTAGAGAATCTAGTTGAGAACATCAAAAGTAAGT
TCGACCGCGAATCCTTCCAAGGCTTCATTGGCTCATGTCTACCGATGCAAGCCGTATACAAAACCATCGACTCGGTAGCA
CCAACCACTGCCAGTGTGTTCATTAATGGTGAGAGCGGTACGGGTAAAGAGGTGTGTGCTGAAGCCATCCATAAAGAGAG
CCAGCGCCGCGACAAGCCGTTCGTTGCGATCAACTGTGGTGCCATTCCTCGTGATTTGATGGAAAGTGAAATTTTCGGCC
ACGTTAAAGGCGCATTTACGGGTGCAACGACGGATAGAAAAGGCGCTGCGATGCAAGCGCATGGCGGCACTCTATTTCTC
GACGAGCTCTGTGAGATGGAGCTCGAGATGCAGAAGAAATTGCTGCGATTCTTACAAACAGGTACATTTACCCCACTGGG
GGCAACTCGTGAAGTTAAAGTAGATGTACGAATCATCTGTGCGACTAACCGTGACCCGTTGTTAGAGGTTGAAGAAGGTC
GCTTTAGAGAAGATCTCTACTACCGTGTTCACGTTGTGCCCATTGAAATGCCGCCTTTACGAGAGCGTGGTAGTGACATT
GTCACACTATGTAAGCACTTTTTGAAAATCTACGCTAAACAAGACGGCAAGAAATTCAAATCGATAGATAAAGAAGCTCA
GGTTTTATTAAAGAACTACCCTTGGCCAGGTAATGTTCGCCAACTTCAGAACATTATTCGAAACATTGTGGTCCTTAATA
ACGAAACCAATGTGACCAAAGAGATGATACCCGCTCCGATTAATGGTGCGGGTGGCCGGAGCAAAGTCGTAACGCCTACT
AAGCGCGCCGAACCTGTTCAGGAAGCAGTAGTAGAAACAGTCTCCAAGCCTGCCCCATTGACTCCAGATCAAATTGAGGC
CGCATCTGAGAGCAACGGCCCCGCTCTTACCAATGGAGATGGTAGTATTCGCCCAATGTGGAAGATTGAGCGAGAAGCGA
TTCAAAATGCGATCAACCACTGTGATGGTAATGTGTTGAATGCCGCAGTGCTGTTAGAGCTTAGCCCTTCTACCGTGTAT
CGTAAGAAGCAGGCATGGGAAGCTGAAGATGAGTACAACCAAGCCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(143-309)

Bacterial regulatory protein, Fis family (HTH_8)

(446-482)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.688

97.172

0.483

Multiple sequence alignment