Detailed information NTG0092198

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: OCV49_RS10030
• Genome accession: NZ_AP025499
• Coordinates: 2180407..2181831 (-)
• Length: 474 a.a.
• NCBI ID: WP_192853115.1
• Uniprot ID: -
• Organism: Vibrio lentus strain LMG 21034
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2175407..2186831

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV49_RS10005	purT	2176121..2177296 (-)	1176	WP_102338860.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
OCV49_RS10010	tnpA	2177427..2177864 (-)	438	WP_192854770.1	IS200/IS605 family transposase	-
OCV49_RS10015	cdd	2178086..2178973 (-)	888	WP_192853114.1	cytidine deaminase	-
OCV49_RS10020	-	2179331..2180008 (-)	678	WP_017104495.1	LrgB family protein	-
OCV49_RS10025	-	2180011..2180382 (-)	372	WP_017080643.1	CidA/LrgA family protein	-
OCV49_RS10030	sbcB	2180407..2181831 (-)	1425	WP_192853115.1	exodeoxyribonuclease I	Machinery gene
OCV49_RS10035	-	2182768..2183202 (+)	435	WP_017104493.1	DUF4402 domain-containing protein	-
OCV49_RS10040	-	2183257..2183694 (+)	438	WP_029223395.1	DUF4402 domain-containing protein	-
OCV49_RS10045	-	2183691..2184401 (+)	711	WP_102384522.1	molecular chaperone	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54638.93 Da
• Isoelectric Point: 5.0264

>NTDB_id=92198 OCV49_RS10030 WP_192853115.1 2180407..2181831(-) (sbcB) [Vibrio lentus strain LMG 21034]
MSSDNQSTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNIIGEPLVIYCQPPADYLPGPEAALITRITPQKAMSQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGINWPTNDEGFP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNY
TSWVVPMAWHPTNQNAVIVVDLAKDPSPLLEMDADELRERLYTKRSELAEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSNDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALGITFSDE
RIKPLLFRYRARHFPWTLDEAEQLKWANHCREYYESRLEDYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=92198 OCV49_RS10030 WP_192853115.1 2180407..2181831(-) (sbcB) [Vibrio lentus strain LMG 21034]
ATGAGTTCAGATAATCAGTCGACCTACTTCTTTTTCGATTACGAAACATGGGGCGTTAGCCCAGCGAAAGATCGCCCGAG
TCAGTTCGCCGGTGTTCGTACCGACCAAGATTTCAATATTATCGGAGAGCCTTTGGTTATCTACTGCCAACCTCCTGCTG
ATTATCTGCCTGGACCTGAAGCTGCATTAATAACCCGTATTACACCTCAAAAAGCCATGTCTCAAGGCCTACCCGAGCCT
GAGTTTATCGCTAAGATTCATGCCGAGCTTGCTAAGCCAAATACGACGAGCCTTGGCTATAACAGCATTCGATTCGATGA
CGAAGTAACGCGATATACCTGTTACCGTAACTTTATCGACCCATATGCGTGGAGCTGGCAGAACGGCAATTCACGTTGGG
ATTTACTGGATGTGATGCGTGCGGTTCATGCACTGCGCCCTGAAGGTATTAACTGGCCAACGAACGATGAAGGTTTTCCA
AGTTTCAAACTGGAACACCTATCTGTGGCAAACGGCATCGAACACGAAAATGCGCACGACGCGATGGCTGATGTTATTGC
GACTATCGAACTGGCTAAGAAGTTAAAGGCCGCACAGCCTAAGATGTTTGATTACCTCTACAACATGCGTCATAAGCGCA
AGTTGAACGATTTAGTCGACATCGTAAACATGACGCCTTTAATGCACGTTTCTGGCATGTTCGGTCGTGATTGTAATTAC
ACAAGCTGGGTGGTGCCTATGGCGTGGCATCCGACTAACCAAAACGCAGTTATCGTGGTCGACCTAGCGAAAGACCCAAG
TCCTTTACTGGAAATGGATGCTGATGAACTAAGAGAAAGGCTTTATACCAAGCGCAGTGAGCTTGCTGAAGACGAACTGC
CAGTACCAATCAAACTGGTACAACTCAACAAGTGCCCTATTCTCGCGCCAGCAAAAACGCTCACTGCTGAAAATGCTGAA
ACGATCGGTATCGATCGTCAACAGTGTTTGAAGAATCTAGCCCTATTACGTGAACATCCAGAGATCCGTGAAAAGCTGAT
CGGTTTATATTCACAAGAGCGTGAATACGAGAAAAGCAATGACGTAGACACACACCTTTACGACGGCTTCTTTTCACCAG
CTGACAAGACCGCGATGAACATCATTCGCGAAACTGACCCAAATAACTTGGCAGCACTGGGCATCACTTTTAGTGACGAA
CGTATTAAGCCTTTGTTGTTCCGTTACCGCGCTCGCCATTTCCCATGGACGCTAGACGAAGCTGAACAACTTAAGTGGGC
TAACCACTGTCGTGAGTATTATGAGAGTCGTTTAGAGGATTATATGTTGAACCTCGAAAACCTCGCGCATGAACATGAAA
GCGACGAGAAGAAAATGGCTATCTTGAAAGCGGTTTATCAGTACGTAGAAAAGTTAGCTAGTTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	76.744	99.789	0.766