Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   VP456_RS16610 Genome accession   NZ_CP142142
Coordinates   3273965..3274609 (-) Length   214 a.a.
NCBI ID   WP_014418762.1    Uniprot ID   A0A2Z4EIP2
Organism   Bacillus velezensis strain PD9     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3268965..3279609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP456_RS16575 (VP456_16515) - 3270150..3270581 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  VP456_RS16580 (VP456_16520) - 3270581..3270922 (+) 342 WP_022553706.1 Na(+)/H(+) antiporter subunit C -
  VP456_RS16585 (VP456_16525) - 3270915..3272396 (+) 1482 WP_021495363.1 Na+/H+ antiporter subunit D -
  VP456_RS16590 (VP456_16530) - 3272402..3272878 (+) 477 WP_017419419.1 Na+/H+ antiporter subunit E -
  VP456_RS16595 (VP456_16535) - 3272878..3273162 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  VP456_RS16600 (VP456_16540) mnhG 3273146..3273520 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  VP456_RS16605 (VP456_16545) - 3273560..3273943 (-) 384 WP_014418761.1 hotdog fold thioesterase -
  VP456_RS16610 (VP456_16550) comA 3273965..3274609 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  VP456_RS16615 (VP456_16555) comP 3274690..3276981 (-) 2292 WP_099721970.1 histidine kinase Regulator
  VP456_RS16620 (VP456_16560) comX 3276993..3277157 (-) 165 WP_007613432.1 competence pheromone ComX -
  VP456_RS16625 (VP456_16565) - 3277157..3278068 (-) 912 WP_022553710.1 polyprenyl synthetase family protein -
  VP456_RS16630 (VP456_16570) degQ 3278220..3278360 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  VP456_RS16635 (VP456_16575) - 3278826..3279167 (+) 342 WP_014418765.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24302.70 Da        Isoelectric Point: 4.9953

>NTDB_id=921946 VP456_RS16610 WP_014418762.1 3273965..3274609(-) (comA) [Bacillus velezensis strain PD9]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=921946 VP456_RS16610 WP_014418762.1 3273965..3274609(-) (comA) [Bacillus velezensis strain PD9]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4EIP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86