Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   VP456_RS06055 Genome accession   NZ_CP142142
Coordinates   1136999..1137577 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain PD9     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1131999..1142577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP456_RS06030 - 1132500..1133015 (-) 516 WP_369719112.1 methyl-accepting chemotaxis protein -
  VP456_RS06035 - 1133259..1133918 (-) 660 Protein_1126 protoglobin domain-containing protein -
  VP456_RS06040 (VP456_06010) - 1133915..1135438 (-) 1524 WP_014417355.1 FAD-dependent oxidoreductase -
  VP456_RS06045 (VP456_06015) - 1135563..1136420 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  VP456_RS06050 (VP456_06020) - 1136451..1136684 (-) 234 WP_007610478.1 IDEAL domain-containing protein -
  VP456_RS06055 (VP456_06025) comK 1136999..1137577 (+) 579 WP_003155179.1 competence protein ComK Regulator
  VP456_RS06060 (VP456_06030) - 1137723..1138090 (+) 368 Protein_1131 iron chaperone -
  VP456_RS06065 (VP456_06035) - 1138117..1138488 (+) 372 WP_029973183.1 iron chaperone -
  VP456_RS06070 (VP456_06040) - 1138611..1139120 (+) 510 WP_029973182.1 MepB family protein -
  VP456_RS06075 (VP456_06045) - 1139349..1140059 (-) 711 WP_029973179.1 YrpD family protein -
  VP456_RS06080 (VP456_06050) - 1140255..1140524 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  VP456_RS06085 (VP456_06055) - 1140557..1140874 (-) 318 WP_003155166.1 YbjQ family protein -
  VP456_RS06090 (VP456_06060) - 1140916..1142385 (-) 1470 WP_029973178.1 sodium:solute symporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=921904 VP456_RS06055 WP_003155179.1 1136999..1137577(+) (comK) [Bacillus velezensis strain PD9]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=921904 VP456_RS06055 WP_003155179.1 1136999..1137577(+) (comK) [Bacillus velezensis strain PD9]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCGCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823