Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCV49_RS05075 Genome accession   NZ_AP025499
Coordinates   1083386..1084774 (+) Length   462 a.a.
NCBI ID   WP_017111109.1    Uniprot ID   -
Organism   Vibrio lentus strain LMG 21034     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1078386..1089774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV49_RS05060 - 1079708..1080148 (+) 441 WP_102295669.1 hypothetical protein -
  OCV49_RS05070 uvrB 1081084..1083114 (+) 2031 WP_017111110.1 excinuclease ABC subunit UvrB -
  OCV49_RS05075 luxO 1083386..1084774 (+) 1389 WP_017111109.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCV49_RS05080 luxU 1084798..1085142 (+) 345 WP_065110999.1 quorum-sensing phosphorelay protein LuxU -
  OCV49_RS05085 - 1085249..1086136 (-) 888 WP_065111000.1 YvcK family protein -
  OCV49_RS05090 moaA 1086472..1087461 (+) 990 WP_017632500.1 GTP 3',8-cyclase MoaA -
  OCV49_RS05095 moaB 1087554..1088066 (+) 513 WP_192853679.1 molybdenum cofactor biosynthesis protein B -
  OCV49_RS05100 moaC 1088079..1088558 (+) 480 WP_099165352.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCV49_RS05105 moaD 1088555..1088800 (+) 246 WP_065103215.1 molybdopterin synthase sulfur carrier subunit -
  OCV49_RS05110 moaE 1088803..1089276 (+) 474 WP_065103216.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51746.31 Da        Isoelectric Point: 6.4047

>NTDB_id=92189 OCV49_RS05075 WP_017111109.1 1083386..1084774(+) (luxO) [Vibrio lentus strain LMG 21034]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSAEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=92189 OCV49_RS05075 WP_017111109.1 1083386..1084774(+) (luxO) [Vibrio lentus strain LMG 21034]
ATGCAATCAAAAACGCTAGATAACAAATCGAAGTATTTGTTGATGGTAGAGGATACCGCTTCAGTAGCGGCTCTATATCG
CTCGTATCTTACACCGCTCGAGATTGATATCAACATTGTCGGCACAGGCCGCGATGCAATTGAGAGTTTGAATCATCGAA
TCCCAGACCTTATTTTATTAGATCTACGTCTACCTGATATGACGGGTATGGACGTGCTATTTGCTGTAAAACAAAAATAC
CCAGAAGTTCCTGTGATCTTTATGACGGCTCACGGCTCGATCGATACGGCCGTTGAAGCGATGCGTCATGGTTCTCAAGA
TTTCCTTATCAAACCGTGTGAAGCCGACCGACTTCGTATTACGGTGAACAACGCGATCCGCAAAGCGACAAAACTCAAAA
ACAGCGCTGAACATCCCGGTAATCAAAACTATCAAGGCTTCATTGGTAGCAGCCAAACCATGCAGCAGGTCTACCGAACG
ATCGATTCTGCAGCATCGAGTAAAGCGAGTATTTTCATCACAGGTGAAAGTGGCACCGGTAAAGAGGTGTGTGCAGAAGC
GATTCACGCTGCGAGTAAGCGTGGTGATAAGCCTTTCATTGCGATTAACTGTGCCGCTATTCCTAAAGATTTGATTGAGA
GTGAACTGTTTGGTCACGTTAAAGGCGCCTTTACTGGGGCGGCAACGGATCGACAAGGCGCGGCTGAACTCGCAGATGGT
GGAACCCTGTTCCTCGATGAGTTGTGCGAAATGGATCTTGAACTGCAAACCAAGCTTCTGCGTTTTATTCAAACCGGTAC
TTTCCAAAAAGTCGGTTCTTCAAAAATGAAGAGCGTTGATGTGCGCTTTGTTTGTGCAACTAACCGTGACCCTTGGAAAG
AAGTACAAGAAGGTCGCTTTAGAGAAGATTTATACTATCGTTTATACGTGATTCCTTTGCACTTGCCGCCACTGCGTGAG
CGTGGGGAAGATGTTATTGAAATTGCGTACTCTCTGCTGGGCTATATGTCTGTTGAGGAAGGTAAGGCCTTTGTGCGTTT
TGCTCAGGAAGTGCTGGATCGCTTTAACCAATACGAGTGGCCGGGTAACGTTCGTCAGCTACAAAACGTATTACGAAATG
TGGTGGTATTGAATAATGGTAAAGAGATTACTCTGAACATGCTTCCGCCGCCATTGAATCAACCGATTGAAAACAGTCTG
CGACTGAAAGAGAAGCAGAATGAAGACATCACGGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAAACGGCTATCGA
GCAGGCCATAAAAGCGTGTGATGGTAACATCCCTCGCGCGGCAGGCTTTTTGGATGTCAGTCCATCGACGATTTACCGTA
AATTGCAAACGTGGAATGCGAAACAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

96.97

0.838
  pilR Pseudomonas aeruginosa PAK

38.393

96.97

0.372

Multiple sequence alignment